Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq621678 102 8e-17 seq361176 102 8e-17 seq502676 96.9 3e-15 seq5020 95.1 1e-14 seq731700 93.3 4e-14 seq564812 87.8 2e-12 seq794097 86.0 6e-12 seq690132 84.2 2e-11 >seq621678 Length=9740 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||| || || ||| | || || | |||||| || | | Sbjct 570 GACTCCTTTTGAATGTTGTAATCCGCCAAAGTCCTTCCATCTTCCAATTGTTTGCCTGCA 629 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || | ||| || ||||| || || ||||||||||| ||| |||| | ||||| Sbjct 630 AAGATAAGCCTCTGCTGATCCGGTGGAATTCCTTCTTTGTC-CTGAATTTTGGCTTTTAC 688 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| ||| || || | ||| | ||||| ||||| || ||||| Sbjct 689 GTTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAACTGTTTTGCCAGTTAGGGTTTT 748 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 749 GACGAAAATCTGCAT 763 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| ||||| | | ||||||||||||| |||||| || | || || ||||| Sbjct 326 AACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCAAGGGTTCGTCCATCCTC 385 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||| || || || | | | || || | |||||| || || || || || |||||||| | Sbjct 386 GAGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGGATGCCCTCTTTGTC-CT 444 Query 138525 GATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || | |||| ||| | | || | ||||| | ||||||||| | || | |||| Sbjct 445 GAATCTTTGCTTTGACATTATCAATAGTGTCAGAGCTCTCCACCTCCAGAGTAATGGTTT 504 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||||| ||||| ||||| |||||||| Sbjct 505 TTCCAGTCAATGTTTTCACAAATATCTGCAT 535 >seq361176 Length=4428 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| | || || |||||||| || || |||| Sbjct 4227 TTGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTTCCGG 4168 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | | || |||||||| || |||||||| || ||||| ||||| ||| || || | Sbjct 4167 CAAAAATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGA 4108 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||| |||| || || ||||| | || | ||| ||||| || || |||| Sbjct 4107 CGTTGTCGATGGTATCGGAGGATTCAACCTCCAGGGTAATCGTCTTACCCGTGAGGGTTT 4048 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 4047 TGACGAAGATCTGCAT 4032 >seq502676 Length=6550 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||| |||||| || || ||| | | ||| || | |||||| || | | Sbjct 1270 GACTCCTTTTGAACGTTGTAATCTGCCAGAGTCCTCCCGTCTTCCAATTGTTTGCCTGCA 1211 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | ||| || || || || || ||||||||||| ||| |||| | ||| | Sbjct 1210 AATATCAGCCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCT-TGAATTTTGGCTTTCAC 1152 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| ||| || || | || | |||||||| ||||| ||||| Sbjct 1151 GTTATCAATTGTGTCGGAGCTCTCAACTTCCAGAGTAATTGTTTTACCGGTCAGGGTTTT 1092 Query 138600 TACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 1091 GACAAAAATCTGCAT 1077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||| || || || |||||| ||||| || || || || | | Sbjct 1498 GACTCCTTTTGGATGTTATAATCAGCCAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCA 1439 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | |||||| || || || ||||||||||| || || ||| ||| | Sbjct 1438 AATATAAGCCTCTGTTGATCGGGTGGGATACCTTCTTTATCCTGTATCTTTGCTTTGACA 1379 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | |||||| || | || | ||||| |||||||| || || Sbjct 1378 TTATCAATTGTGTCAGAACTCTCCACTTCAAGAGTGATGGTTTTTCCAGTCAGTGTCTTG 1319 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 1318 ACAAATATCTGCAT 1305 >seq5020 Length=1186 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGT- 138442 || |||||| || | || | |||| ||| | |||| ||||| ||||||||||| | Sbjct 1041 GCCGCCGCCGCGTAGGCGAAGGACTAGATGCAGTGTTGATTCCTTCTGAATGTTGTAATC 982 Query 138443 CGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCG 138502 |||| | ||| | |||||| || || || |||| | |||| || ||||| || |||| Sbjct 981 CGCT-AAAGTCCTGCCGTCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCCG 923 Query 138503 GAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGA 138560 |||| || ||||| ||||| ||| | || | || |||| || | |||||||| Sbjct 922 GAGGGATCCCTTCCTTGTC-CTGAATCTTGGCCTTGACATTG-TCGATGGTGTCGGAGCT 865 Query 138561 CTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || |||| || | ||||| || || || ||||| || || |||||||| Sbjct 864 TTCGACTTCGAGAGTGATGGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 811 >seq731700 Length=3081 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| ||| ||||| | | | |||||||||||||||||||| || | ||||| Sbjct 1589 CGCAGAACCAAATGGAGGGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTACGGCCA 1530 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 |||||||| ||||| || | |||| || | |||||||||||| || || || || ||| Sbjct 1529 TCCTCGAGCTGTTTCCCAGCGAAGATCAGCCTCTGTTGGTCCGGTGGGATTCCCTCCTTG 1470 Query 138520 TCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 || || | || | ||||| ||| || | || || | |||||||| | || | Sbjct 1469 TC-CTGGATCTTGGCTTTAACGTTG-TCAATTGTATCTGAGCTTTCCACCTCAAGGGTAA 1412 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || ||||| ||||| |||||||| Sbjct 1411 TGGTCTTCCCTGTGAGGGTTTTGACAAAGATCTGCAT 1375 >seq564812 Length=421 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTA-GTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||||||||||||||| | ||| || ||| | | || | || ||| || | Sbjct 232 GACTCCTTTTGAATGTTGTAAGACGC-CAAAGTCCTTCCAACTTCCAATTATTTGCCTGC 174 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 | |||| || | ||| || ||||| || || ||||||||||| ||||| ||||| Sbjct 173 AAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTTGTCCTCAATTTTGGCTTTTAC 114 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| ||| || || | ||| | |||| ||||| |||||||| Sbjct 113 ATTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAATTGTTTGGCCAGTAAGAGTTTT 54 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 53 GACGAAAATCTGCAT 39 >seq794097 Length=14469 Score = 86.0 bits (94), Expect = 6e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 52393 CCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCG 52452 ||||||| || | ||||||||| || ||||| | || || ||||| ||||| || Sbjct 12147 CCGAGCGTCTGCTCGCCTTCGCCTGCGTGGAGGGGATATTCTTCTCCGGAAGCTTCTGCG 12088 Query 52453 CCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGA 52512 | || || | |||| | | || | |||||||| |||||||| |||||| |||| Sbjct 12087 CAATATTCTGGCTTAAGAAGCGCGGGTTGATGCCCGGGTTGACGTTCTCCAACGAATTGA 12028 Query 52513 TATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 ||||||| || || || ||||| ||||| |||||||| Sbjct 12027 TATCGCGGGATGAGGGTTTGCACTGCGACTTCGCGTGCCT 11988 >seq690132 Length=1697 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||| |||| || || ||| | || | |||||| || | | Sbjct 1028 GACTCCTTTTGAATGCTGTAATCCGCCAAAGTTTTTTCAACTTCCAATTGTTTGCCTGCA 969 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || | ||| || | ||| || || ||||||||||| ||| |||| | ||||| Sbjct 968 CAGATGAGCCTCTGCTGATTCGGTGGAATCCCTTCTTTGTCC-TGAATTTTGGCTTTTAC 910 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| ||| || || | ||| | ||||| ||| | |||||||| Sbjct 909 ATTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAATTGTTTTGCCAATTAGAGTTTT 850 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 849 GACGAAAATCTGCAT 835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491335209135360