Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq677466 127 2e-24 seq794097 96.9 4e-15 seq615101 95.1 1e-14 seq651671 84.2 3e-11 seq445017 84.2 3e-11 seq551794 82.4 9e-11 >seq677466 Length=8805 Score = 127 bits (140), Expect = 2e-24 Identities = 309/456 (68%), Gaps = 14/456 (3%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || ||||| ||||| ||||| ||||| || |||||||| | |||||||| |||||| Sbjct 7325 TACTCCCCCACCCGTTTCTCAAAGAAATTCGTCTTCCCCTGCAGGCTGATCAACTCCATC 7384 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCA--CCCCAATCTGTTTGAGGAGAC 127349 ||||||||||||||| || | || || || |||||| | || || | | Sbjct 7385 CAATCAAATGGGTTCTGCACATTGTACATC-TTCCCATACCCCAA-CGCATTCAGCAATC 7442 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||||| || | |||||||||| |||| ||| ||||| || | | || Sbjct 7443 GATCCGCCACAAATTCAATGTACTGGCTCATCAATTCACCATTCATCCCCACCAACGCAC 7502 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || ||||| || | | || || |||| || || ||||| ||| || ||| | | Sbjct 7503 ACGGCAGCGCATCGCACACAAATTCCCTCTCGATCTCAACAGCATCCGCCACTATGCCCT 7562 Query 127470 GAATAGTGTCCACCC-CAGGTCTATTGCGTAA--AGTCT-TGAAG-AGTTCCACAGCAAA 127524 | | ||| | | ||| | || | | | || || | ||| || ||| ||||| Sbjct 7563 TCACTTTCTCCTCGCTCAGCTTCAT--CTTCAGCAGGCTGTAAAGCAGG--CAC-GCAAA 7617 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || |||||| ||||| || | ||| || | ||| || || || || || ||||| Sbjct 7618 GTCACAGTGGAGGCCCTCATCCCTGGAAATCAATTCGTTTGAAAAAGTCAATCCAGGCAT 7677 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 | || |||||||||| |||||||||||| || || |||||||| || |||||||| Sbjct 7678 CAATCCACGCTTCTTCAGCCAGAAAATCGCGCAGAAGCTTCCAGAGAAAAAAATCCCCTC 7737 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 |||||| || || || | || ||||| |||||||| Sbjct 7738 CACACAAGCAAAGGCGATTATCCGCTCAGCAAAGGA 7773 >seq794097 Length=14469 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| | |||||| || || || || | ||| || ||||| || || ||||| | || Sbjct 12005 GTGCAAACCCTCATCCCGCGATATCAATTCGTTGGAGAACGTCAACCCGGGCATCAACCC 12064 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || || || |||||||| ||||||||||| || Sbjct 12065 GCGCTTCTTAAGCCAGAATATTGCGCAGAAGCTTCCGGAGAAGAATATCCCCTCCACGCA 12124 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCG 127709 ||||| || | |||||||||| ||||| ||| || || || ||| || | Sbjct 12125 GGCGAAGGCGAGCAGACGCTCGGTGAAGGATTCGGAACCCTG----AATCCAGCGCAGGG 12180 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||| | ||||| |||| || || || | ||| ||||| || Sbjct 12181 CCCAATTGGCCTTGTTCTGGACGCAGGGAATGGTGTGGATGGC 12223 >seq615101 Length=1483 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/278 (69%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGC-GGG 12850 || |||||||| ||||||||||| || || || ||||| || || ||||||||| | | Sbjct 1056 AAACCATCCATTTCAGTCAAGAGCTGGTTAATAGTTTGCTCTCGCTCATCATTCCCACCG 997 Query 12851 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 | | | || || | | ||| | || || || |||||||| ||||||||||| || || Sbjct 996 CCGAGC-CCTGCCCCTCTCTGCCTCCCCACAGCATCAATTTCATCAATGAAAACAATGCA 938 Query 12911 CGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || | || || ||| ||||| | ||| | |||||| || || ||||||| Sbjct 937 AGG-CGCCTTCGACTTGGCTTTCTCAAACAAATCCCTCACTCTTGAAGCTCCAACACCCA 879 Query 12970 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 13029 |||||| ||| ||||| | || || | ||| || ||| || ||| | ||||| | Sbjct 878 CAAACAGCTCTACAAACTCGGATGCTGCACACGAGAAGAACGGCACGCCTGCCTCACCGG 819 Query 13030 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 | | || | || | |||||||| || || || ||| Sbjct 818 CCACCGCCCTTGCCAAAAGGGTCTTTCCGGTACCCGGT 781 >seq651671 Length=10698 Score = 84.2 bits (92), Expect = 3e-11 Identities = 186/278 (67%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || |||||||| || ||||| || |||||||||||||| || | ||||| ||| || Sbjct 7014 AATCCATCCATTTCCGTCAATAGCTGATTGATGGTTTGCTCCCTCTCATCGTTCCCG--- 6958 Query 12852 ATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 |||| ||||| | | ||| | ||||| || || ||||| |||||||| || ||| Sbjct 6957 CCACCAAGCCCCGCCCCTCTCTGCCTCCCGACAGCATCTATTTCATCAATGAACACTATA 6898 Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || || || | ||| || || | ||| | |||||| || || || ||| Sbjct 6897 CATGGAGCTTTAGCCTTGGCCTTATCGAACAAATCCCTCACTCTTGAAGCCCCAACGCCC 6838 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||||| ||| ||||| | | || | ||| | ||| || || | ||| || Sbjct 6837 ACAAACAGCTCTACAAACTCTGAAGCTGCACAAGAAAAGAATGGCACCCCTGCTTCCCCG 6778 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | || | || || || ||||||||||| || || Sbjct 6777 GCCACCGCCCTCGCCAGAAGAGTCTTCCCCGTGCCAGG 6740 >seq445017 Length=3110 Score = 84.2 bits (92), Expect = 3e-11 Identities = 231/346 (67%), Gaps = 10/346 (3%) Strand=Plus/Minus Query 12726 AGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCG 12785 ||||| ||| || ||||| ||||| || || || ||||||| || || || | Sbjct 2299 AGGGCAGAGTCGAGAATATCTGCACGGTTTGTGGCTGCAATGACAATAATACCAGTATTC 2240 Query 12786 TTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT- 12844 || || |||||||| || ||||| || || || | ||||| || | |||||||| Sbjct 2239 CCTTCAAAACCATCCATTTCTGTCAACAGCTGGTTTAAAGTTTGCTCTCTCTCATCATTT 2180 Query 12845 -CGCGGGC-ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAA 12902 | | | |||||| | | || || | || || || |||||||| |||| ||| Sbjct 2179 CCTCCACCGATACCAGTCCCTCTTTGTCGT---CCAACAGCATCAATTTCATCAACAAAA 2123 Query 12903 ACGATACACGGTTGATTTTCACGGGCAA-CTTCAAAGATATCTCGCACTCTCTTGGCACC 12961 || || || ||| |||||| ||| ||| ||| | ||| || || | | ||||| Sbjct 2122 ACAATGCATGGTGCATTTTCCTTGGCTTTCTTGAAA-AGATCACGGACCCGCGAAGCACC 2064 Query 12962 GACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGG 13020 |||||| |||||||| || ||||| | | | ||| |||| || || ||||| || Sbjct 2063 GACACCAACAAACATTTCAACAAACTCAGAACCTGAA-ATTGAGAAAAATGGGACCCCGG 2005 Query 13021 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 ||| || || || || ||| || | ||||| ||||| || || Sbjct 2004 CTTCCCCAGCTATAGCCTTGGCTAGCAATGTCTTTCCCGTACCAGG 1959 >seq551794 Length=11183 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGA 115961 |||||||||| |||||||| |||||||||||||| || ||||||| | |||| || || Sbjct 2444 TAGATGTTGGATGTGTATGGTTCAAAGCACTCATTATT-CCCAAGAATCTGGCTAGTTGA 2502 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAG 115988 || |||||||||||||| | ||||| Sbjct 2503 AGCAGTGGGCATGGGTGCTACAAGAAG 2529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607415932414080