Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq361176 116 4e-21 seq588422 113 5e-20 seq5020 95.1 1e-14 seq621678 93.3 5e-14 seq553100 91.5 2e-13 seq502676 87.8 2e-12 seq384027 87.8 2e-12 seq731700 86.0 7e-12 >seq361176 Length=4428 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| | || ||||||||||| ||||| || Sbjct 4223 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAA 4164 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | || ||||||||| |||||| ||||| ||| Sbjct 4163 AATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGT 4105 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || ||| ||||| || |||| || || || || ||||| || ||||| | Sbjct 4104 TGTCGATGGTATCGGAGGATTCAACCTCCAGGGTAATCGTCTTACCCGTGAGGGTTTTGA 4045 Query 46581 CAAAGATTTGCATTTT 46596 | ||||| ||||| || Sbjct 4044 CGAAGATCTGCATCTT 4029 >seq588422 Length=1254 Score = 113 bits (124), Expect = 5e-20 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| | || ||||| |||| ||||| |||||||||||||| Sbjct 96 TCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAG 155 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | ||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 156 ATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTA 215 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | ||||| |||| || || || | ||||| |||||||| || || || || Sbjct 216 TCGATGGTGTCGGAGCTC---TCGACCTCAAGGGTGATCGTTTTGCCGGTGAGGGTCTTG 272 Query 46580 ACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 273 ACGAAGATCTGCAT 286 >seq5020 Length=1186 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| ||| ||||| || || ||||| || | || ||| | |||| || Sbjct 1019 ACTAGATGCAGTGTTGATTCCTTCTGAATGTTGTAATCCGCTAAAGTCCTGCCGTCCTCC 960 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| ||||| || || | ||||||||| || | || | | ||||||||| Sbjct 959 AGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGA 900 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | |||||| ||| || || | |||||||||||| Sbjct 899 ATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTTTCGACTTCGAGAGTGATGGTTTTG 840 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || ||||| || ||||| |||||| Sbjct 839 CCGGTTAGGGTTTTGACGAAGATCTGCATT 810 >seq621678 Length=9740 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||| || |||| || ||||| |||| ||||||||||| || || || Sbjct 1028 CTCCTTCTGGATATTATAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAA 1087 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| |||| || | | |||||||| |||||| ||||| | Sbjct 1088 GATGAGACGCTGCTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 1147 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || |||| || || || | || ||||||||||| || || ||||| Sbjct 1148 ATCAATTGTATCGGAGCTC---TCGACTTCGAGAGTTATGGTTTTGCCGGTGAGGGTTTT 1204 Query 46579 AACAAAGATTTGCATTTT 46596 || ||||| ||||| || Sbjct 1205 CACGAAGATCTGCATCTT 1222 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || ||||||||| | ||||| || | || || || | || ||| Sbjct 327 ACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCAAGGGTTCGTCCATCCTCG 386 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || ||||||| | ||| || || | || | || ||| |||||| Sbjct 387 AGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGGATGCCCTCTTTGTCCTGA 446 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| |||| | | | ||||| |||| ||||| |||| || |||||| Sbjct 447 ATCTTTGCTTTGACATTATCAATAGTGTCAGAGCTC---TCCACCTCCAGAGTAATGGTT 503 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| ||||| ||||| || ||||| Sbjct 504 TTTCCAGTCAATGTTTTCACAAATATCTGCAT 535 >seq553100 Length=2664 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || | ||| |||| ||| | || || || || | |||||| || | Sbjct 881 CCGCCTCTCAACCTCAAAACCAAATGTAGAGTGGAATCTTTCTGAACATTGTAATCTGCC 822 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | | | ||||||||||| ||||| ||||||| ||||||||| | | || Sbjct 821 AGAGTCCTCCCATTTTCGAGCTGCTTACCGGCAAATATCAGGCGCTGCTGTTTGTTAGGA 762 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| ||||| ||||| ||| | | || | ||| ||||| Sbjct 761 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGACTGCGTCTGAACTGTCCAC 703 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | || |||||||| || |||| ||||| || ||||| |||||| Sbjct 702 CTCTAGGGTAATGGTTTTTCCAGTCAAGGTTTTGACGAAGATCTGCATT 654 >seq502676 Length=6550 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || ||||| || |||| || || || | || |||||||||||||||||||| Sbjct 584 CTCCTTCTGTATATTATAATCGGCGAGGGTCCGGCCATCCTCGAGCTGCTTGCCGGCGAA 525 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| |||| || | | ||||| ||| |||||| ||||| | Sbjct 524 GATGAGACGCTGCTGATCGGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTGACATT 465 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || |||| || || || | || ||||| ||||| || || ||||| Sbjct 464 ATCTATGGTATCGGAGCTC---TCGACTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTT 408 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 407 GACGAAGATCTGCAT 393 >seq384027 Length=1641 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || |||||| | || || |||||||| |||||||| Sbjct 148 CTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAA 89 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| ||||||||||| | || | | ||||||||| |||||| ||||| Sbjct 88 AATCAGACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA 33 >seq731700 Length=3081 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| | | ||||| | || ||||||||||| ||||| || Sbjct 1793 TCCTTCTGGATGTTGTAGTCCGCCAATGTGCGGCCATCCTCGAGCTGCTTACCGGCAAAG 1734 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | ||||||||| | || | | ||| |||||| |||||| ||||| | Sbjct 1733 ATCAGCCTCTGCTGGTCCGGTGGGATCCCCTCTTTGTCCTGGATCTTAGCCTTGACATTA 1674 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | || || |||| || || |||| || || || || || || || || || Sbjct 1673 TCAATGGTATCAGAGCTC---TCAACCTCCAGGGTAATAGTCTTCCCTGTGAGGGTCTTT 1617 Query 46580 ACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 1616 ACAAAGATTTGCAT 1603 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||||||| | || ||||| || || ||||| || | Sbjct 1373 CCTCCACGGAGACGGAGGACCAGATGGAGAGTGGATTCCTTCTGAATGTTGTAATCAGCG 1314 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || |||||||| ||||||||||| || | | |||||||| | || Sbjct 1313 AGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCGAAGATGAGCCTTTGCTGGTCTGGGGGA 1254 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||||||| ||||| ||| | ||| | | | || || |||| || Sbjct 1253 ATCCCTTCCTTGTCCTGAATCTTAGACTT-AACGTTGTCGATTGTATCGGAGCTC---TC 1198 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || | |||||||| ||||| || || || ||||| ||||| ||||| Sbjct 1197 CACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 1147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559626374021760