Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq621678 125 5e-24 seq690132 113 3e-20 seq564810 113 3e-20 seq564812 107 1e-18 seq502676 98.7 7e-16 seq500796 95.1 8e-15 seq603803 91.5 1e-13 seq5020 91.5 1e-13 seq564815 86.0 4e-12 seq553100 86.0 4e-12 >seq621678 Length=9740 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||||||||||||| || ||||| || || ||||| |||||| | | |||| Sbjct 552 AGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCCAAAGTCCTTCCATCT 611 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||||||||| || |||| || | | ||||||||||| || | ||||||||||| Sbjct 612 TCCAATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGAATTCCTTCTTTGTCC 671 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| | | | | |||||| | ||| || || |||| |||| |||| Sbjct 672 TGAATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAACTGTT 731 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||| ||||| ||||| |||||||| Sbjct 732 TTGCCAGTTAGGGTTTTGACGAAAATCTGCAT 763 >seq690132 Length=1697 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||||||||||||| || ||||| || | ||||| |||||| |||| | Sbjct 1046 AGGACCAAATGCAAAGTGGACTCCTTTTGAATGCTGTAATCCGCCAAAGTTTTTTCAACT 987 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||||||||| || || | || | | |||||||| || || | ||||||||||| Sbjct 986 TCCAATTGTTTGCCTGCACAGATGAGCCTCTGCTGATTCGGTGGAATCCCTTCTTTGTCC 927 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| | | | | |||||| | ||| || || |||| ||||||||| Sbjct 926 TGAATTTTGGCTTTTACATTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAATTGTT 867 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCATGTC 39722 || || ||| |||||| ||||| |||||||| || Sbjct 866 TTGCCAATTAGAGTTTTGACGAAAATCTGCATCTC 832 >seq564810 Length=1937 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||||||||||||| || ||||| || || ||| | |||||| | | || | Sbjct 699 AGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAACCCGCCAAAGTCCTTCCAACT 640 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||||| ||| || |||| || | | ||||||||||| || | ||||||||||| Sbjct 639 TCCAATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTTGTCC 580 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| | | | | |||||| | ||| || | |||| ||||||||| Sbjct 579 TCAATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCACCTTCCAGCGTAATTGTT 520 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || |||| |||||| ||||| |||||||| Sbjct 519 TGGCCAGTTAGAGTTTTGACGAAAATCTGCAT 488 >seq564812 Length=421 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||||||||||||| || ||||| || || ||| |||||| | | || | Sbjct 250 AGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAAGACGCCAAAGTCCTTCCAACT 191 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||||| ||| || |||| || | | ||||||||||| || | ||||||||||| Sbjct 190 TCCAATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTTGTCC 131 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| | | | | |||||| | ||| || || |||| ||||||||| Sbjct 130 TCAATTTTGGCTTTTACATTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAATTGTT 71 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || | |||||| ||||| |||||||| Sbjct 70 TGGCCAGTAAGAGTTTTGACGAAAATCTGCAT 39 >seq502676 Length=6550 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || | ||||||||| || ||||| | || ||||| |||| | | | || Sbjct 1288 AGGACAAGATGCAAAGTCGACTCCTTTTGAACGTTGTAATCTGCCAGAGTCCTCCCGTCT 1229 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||||||||| || |||| || | | ||||||||| | || | |||||||||||| Sbjct 1228 TCCAATTGTTTGCCTGCAAATATCAGCCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCT 1169 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| | | | | |||||| | ||| || || |||| |||||||||| Sbjct 1168 TGAATTTTGGCTTTCACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGAGTAATTGTT 1109 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | ||||| || || |||||||| Sbjct 1108 TTACCGGTCAGGGTTTTGACAAAAATCTGCAT 1077 >seq500796 Length=7474 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | |||||||| ||||| ||| | ||| ||||| || || || |||| Sbjct 2796 CATC-CCTCCCCTCAAACGCAATACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAAT 2738 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| | | |||| || | || ||||| |||| || |||||||| ||||| | Sbjct 2737 CGGCAAGTGTCCTACCATCTTCAAGCTGCTTCCCAGCAAAGATCAAACGCTGTTGATCAG 2678 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | ||| || || || || || |||| | | | |||||||| |||| Sbjct 2677 GAGGGATGCCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCAATTGTGTCTGAACTTT 2618 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || ||||| ||||| || || || || ||||| || |||||||||||||| Sbjct 2617 CAACCTCCAAGGTAATCGTCTTTCCTGTCAAAGTCTTCACGAAGATCTGCAT 2566 >seq603803 Length=4421 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 39513 CAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAA 39572 ||||| ||||||| || ||||| || || |||| |||||| | | |||| ||||| Sbjct 4098 CAAATACAAAGTGGACTCCTTTTGAATGTTGTAATTTGCCAAAGTCCCTCCATCTTCCAA 4039 Query 39573 TTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATAT 39632 ||||| || |||| || | | |||||||||||| || | | ||| |||| | || Sbjct 4038 TTGTTCGCCTGCAAAGATAAGCCTCTGCTGATCCGATGGAATTCTTTCCGTGTCTTAAAT 3979 Query 39633 -TTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTAC 39691 || |||| | | | ||||| | ||| || || |||| |||||||||||| Sbjct 3978 CTTGGCTTTTACATTTATCAATGGTGTCGGAGCTCTCAACTTCCAGCATAATTGTTTTAC 3919 Query 39692 CCGTTAAAGTTTTTACGAAGATCTGCA 39718 | |||| ||||| ||||| ||||||| Sbjct 3918 CAGTTAGGGTTTTGACGAAAATCTGCA 3892 >seq5020 Length=1186 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 ||||||| || | || || || | ||||| || ||| || || || || ||||| | Sbjct 1039 CGCCGCCGCGTAGGCGAAGGACTAGATGCAGTGTTGATTCCTTCTGAATGTTGTAATCCG 980 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 | ||| | | || |||| || |||||| |||| || | ||||||||||||| | Sbjct 979 CTAAAGTCCTGCCGTCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCCGGAG 920 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTT 39667 | | ||||| ||||| | | | || | || | || |||| | ||||| | ||||| Sbjct 919 GGATCCCTTCCTTGTC-CTGAATCTTGGCCTTGACATTGTCGATG--GTGTCGGAGCTTT 863 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || | ||| || ||||| || |||| ||||| |||||||||||||| Sbjct 862 CGACTTCGAGAGTGATGGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 811 >seq564815 Length=3663 Score = 86.0 bits (94), Expect = 4e-12 Identities = 133/189 (70%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 39532 TTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATT 39591 ||||| || || |||| |||||| | | |||| |||||||||| || |||| || Sbjct 723 TTTTGAATGTTGTAATTTGCCAAAGTACCTCCATCTTCCAATTGTTCGCCTGCAAAGATA 664 Query 39592 AAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCT 39651 | | |||||||||||| || | | |||| |||| | || || ||| | | Sbjct 663 AGCCTCTGCTGATCCGATGGAATTCTTTCTGTGTCCTAAATCTTGGCTTTTACATTTATC 604 Query 39652 ACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAA 39710 | || |||| | ||| || || |||| ||||||||||||| |||| ||||| ||||| Sbjct 603 AATGGTGTCGGAGCTCTCAACTTCCAGCATAATTGTTTTACCGGTTAGGGTTTTGACGAA 544 Query 39711 GATCTGCAT 39719 |||||||| Sbjct 543 AATCTGCAT 535 >seq553100 Length=2664 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| ||||||| ||| | || |||||||| | |||| ||||| || | ||| |||| Sbjct 885 CATC-CCGCCTCTCAACCTCAAAACCAAATGTAGAGTGGAATCTTTCTGAACATTGTAAT 827 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||| | | ||| || | || || ||| |||| || | |||||||| | Sbjct 826 CTGCCAGAGTCCTCCCATTTTCGAGCTGCTTACCGGCAAATATCAGGCGCTGCTGTTTGT 767 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | |||||| ||||| || || || | ||| | | |||| ||||| || Sbjct 766 TAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGACTGCGTCTGAACTG 708 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | ||||| ||||| || || || ||||| |||||||||||||| Sbjct 707 TCCACCTCTAGGGTAATGGTTTTTCCAGTCAAGGTTTTGACGAAGATCTGCAT 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 344006928534704