Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq445017 134 2e-26 seq677466 111 2e-19 seq615101 100 3e-16 seq794097 91.5 2e-13 >seq445017 Length=3110 Score = 134 bits (148), Expect = 2e-26 Identities = 238/338 (70%), Gaps = 12/338 (4%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGT-TTCGTTATCAAA 15976 || || ||||| | || || || || || ||||||| |||||| || ||| | ||||| Sbjct 2290 TCGAGAATATCTGCACGGTTTGTGGCTGCAATGACAATAATACCAGTATTCCCT-TCAAA 2232 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| |||||||| |||||||| | |||||| || | |||||||| || Sbjct 2231 ACCATCCATTTCTGTCAACAGCTGGTTTAAAGTTTGCTCTCTCTCATCATTTCCT---CC 2175 Query 16037 ACC---ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 ||| ||||| | | ||| ||| || |||||||| ||||||| || || ||||| Sbjct 2174 ACCGATACCAGTCCCTCTTTGTCGTCCAACAGCATCAATTTCATCAACAAAAACAATGCA 2115 Query 16094 TGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 |||| |||||| || ||| ||| ||||| || || ||| || || ||||||| Sbjct 2114 TGGTGCATTTTCCTTGGCTTTCTTGAAA-AGATCACGGACCCGCGAAGCACCGACACCAA 2056 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211 ||||||| || ||||| | | | ||| |||| || || ||||| | ||| || Sbjct 2055 CAAACATTTCAACAAACTCAGAACCTGAA-ATTGAGAAAAATGGGACCCCGGCTTCCCCA 1997 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || || ||| || | ||||| |||||||| || Sbjct 1996 GCTATAGCCTTGGCTAGCAATGTCTTTCCCGTACCAGG 1959 >seq677466 Length=8805 Score = 111 bits (122), Expect = 2e-19 Identities = 299/452 (66%), Gaps = 4/452 (1%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 |||||||||||||| | |||| ||||| ||||| ||||| || || |||||||| | Sbjct 7773 TCCTTTGCTGAGCGGATAATCGCCTTTGCTTGTGTGGAGGGGATTTTTTTCTCTGGAAGC 7714 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| |||| ||||| |||||||| || | ||||| || | || || ||| Sbjct 7713 TTCTGCGCGATTTTCTGGCTGAAGAAGCGTGGATTGATGCCTGGATTGACTTTTTCAAAC 7654 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTA 102350 || | || || | || ||||| |||||| || |||||| |||| || | Sbjct 7653 GAATTGATTTCCAGGGATGAGGGCCTCCACTGTGACTTTGCGTGCCTGCTTTACAGCCTG 7594 Query 102351 TTGCGTATTAAAC-CAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGAT 102409 || || || | | ||| |||| | | || || ||| || |||||||| Sbjct 7593 CTGAAGATGAAGCTGAGCGA-GGAGAAAGTGAAGGGCATAGTGGCGGATGCTGTTGAGAT 7535 Query 102410 TGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAA 102469 |||| || ||| | | ||||| || || || || | | || |||||| |||| Sbjct 7534 CGAGAGGGAATTTGTGTGCGATGCGCTGCCGTGTGCGTTGGTGGGGATGAATGGTGAATT 7475 Query 102470 GATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCC 102529 |||| | | || ||||| | ||| | ||| ||||| |||| | | ||||| Sbjct 7474 GATGAGCCAGTACATTGAATTTGTGGCGGATCGATTGCTGAATGCG-TTGGGGTATGGGA 7416 Query 102530 A-ATTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGA 102588 | || | || |||| |||||||| | |||||| || ||||| | ||||||| Sbjct 7415 AGATGTACAATGTGCAGAACCCATTTGATTGGATGGAGTTGATCAGCCTGCAGGGGAAGA 7356 Query 102589 CAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 102620 | || ||||| || || |||| ||||| ||| Sbjct 7355 CGAATTTCTTTGAGAAACGGGTGGGGGAGTAT 7324 >seq615101 Length=1483 Score = 100 bits (110), Expect = 3e-16 Identities = 196/287 (68%), Gaps = 22/287 (8%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGC-TG 16032 |||||||||||| || ||||| ||||||||||||||||| || || ||||||||| | Sbjct 1057 AAAACCATCCATTTCAGTCAAGAGCTGGTTAATAGTTTGCTCTCGCTCATCATTCCCACC 998 Query 16033 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 || | | || || | | ||| | ||||| |||||||| ||||||||||| || |||| Sbjct 997 GCCGAGC-CCTGCCCCTCTCTGCCTCCCCACAGCATCAATTTCATCAATGAAAACAATGC 939 Query 16093 ATGGTTGATTTTCGCGAGCGACT--------TCAAAGAGATCCCGTACACGCTTG--GCG 16142 | || ||| ||||| ||||| | ||||| ||| |||| || Sbjct 938 AAGG--------CGCCTTCGACTTGGCTTTCTCAAACAAATCCC--TCACTCTTGAAGCT 889 Query 16143 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 16202 || ||||| ||||||| ||| ||||| | | || | ||| || ||| || || Sbjct 888 CCAACACCCACAAACAGCTCTACAAACTCGGATGCTGCACACGAGAAGAACGGCACGCCT 829 Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | ||||| || | || | || | ||| ||||| || ||||| || Sbjct 828 GCCTCACCGGCCACCGCCCTTGCCAAAAGGGTCTTTCCGGTACCCGG 782 >seq794097 Length=14469 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/255 (68%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 102060 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGT 102119 ||||| |||||| ||| |||||| |||||| |||||||| || |||| || Sbjct 12262 TATATCAAGGATTCTGCCGAGAAGGCCATGCTCTTCCGCGCCATCCACACCATTCCCTGC 12203 Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT-TCCTTTGC 102178 | || || || || ||||||| || ||| || || || || ||||| | Sbjct 12202 GTCCAGAACAAGGCCAATTGGGCCCTGCGCTGGATT----CAGGGTTCCGAATCCTTCAC 12147 Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 102238 ||||| || |||| || || || || ||||| || |||||||| || ||||||||| Sbjct 12146 CGAGCGTCTGCTCGCCTTCGCCTGCGTGGAGGGGATATTCTTCTCCGGAAGCTTCTGCGC 12087 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || | ||||| |||||||| || | ||||| || | ||||||||||| | || Sbjct 12086 AATATTCTGGCTTAAGAAGCGCGGGTTGATGCCCGGGTTGACGTTCTCCAACGAATTGAT 12027 Query 102299 CTCTCGTGACGAGGG 102313 || || || ||||| Sbjct 12026 ATCGCGGGATGAGGG 12012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614579297007360