Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq445017 131 2e-25 seq677466 104 3e-17 seq615101 104 3e-17 seq794097 87.8 2e-12 seq551794 84.2 3e-11 seq651671 82.4 9e-11 >seq445017 Length=3110 Score = 131 bits (144), Expect = 2e-25 Identities = 235/337 (70%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAAA 9283 || || ||||| | || || || || || ||||||| |||||| || ||| | ||||| Sbjct 2290 TCGAGAATATCTGCACGGTTTGTGGCTGCAATGACAATAATACCAGTATTCCCT-TCAAA 2232 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| |||||||| || ||||| | |||||| || | |||||||| || Sbjct 2231 ACCATCCATTTCTGTCAACAGCTGGTTTAAAGTTTGCTCTCTCTCATCATTTCCT---CC 2175 Query 9344 ACC---ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 ||| ||||| | | ||| ||| || |||||||| ||||||| || ||||| || Sbjct 2174 ACCGATACCAGTCCCTCTTTGTCGTCCAACAGCATCAATTTCATCAACAAAAACAATGCA 2115 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 |||| |||||| ||| | | || ||||| || |||| || || |||||||| Sbjct 2114 TGGTGCATTTTCCTTGGCTTTCTTGAAAAGATCACGGACCCGCGAAGCACCGACACCAAC 2055 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 |||||| || ||||| | | | ||| |||| || || ||||| | ||| || | Sbjct 2054 AAACATTTCAACAAACTCAGAACCTGAA-ATTGAGAAAAATGGGACCCCGGCTTCCCCAG 1996 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || || ||| || | ||||| |||||||| || Sbjct 1995 CTATAGCCTTGGCTAGCAATGTCTTTCCCGTACCAGG 1959 >seq677466 Length=8805 Score = 104 bits (114), Expect = 3e-17 Identities = 305/460 (66%), Gaps = 20/460 (4%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| ||||| || || ||||||||||| || |||||||| | ||||| || ||||| Sbjct 7324 ATACTCCCCCACCCGTTTCTCAAAGAAATTCGTCTTCCCCTGCAGGCTGATCAACTCCAT 7383 Query 117045 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCA--CCCCAACTTGTTTGAGGAGA 117102 | |||||||| |||| | | || | || | || ||||||| || || | Sbjct 7384 CCAATCAAATGGGTTCTGCACATTGTACATCT-TCCCATACCCCAACGCATTC-AGCAAT 7441 Query 117103 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTA 117162 ||||||| |||| | |||||||||| | |||| ||| ||||| || | | | Sbjct 7442 CGATCCGCCACAAATTCAATGTACTGGCTCATCAATTCACCATTCATCCCCACCAACGCA 7501 Query 117163 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCG 117222 || || || || || | | || | |||| |||||||| || || ||| ||| | Sbjct 7502 CACGGCAGCGCATCGCACACAAATTCCCTCTCGATCTCAACAGCATCCGCCACTATGCCC 7561 Query 117223 TGGATAGTTTCGGTAGTGGGTC-------TATTACGCAAAGTCTTGAAGAGCTC-CACGG 117274 | | |||| | | | || | || ||| | || || ||| |||| Sbjct 7562 TTCAC--TTTC--TCCTCGCTCAGCTTCATCTTCAGCA--GGCTGTAA-AGCAGGCACG- 7613 Query 117275 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTG 117334 |||| || |||||| |||||||| | |||||| | ||| ||||| || | || | Sbjct 7614 CAAAGTCACAGTGGAGGCCCTCATCCCTGGAAATCAATTCGTTTGAAAAAGTCAATCCAG 7673 Query 117335 GCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATAC 117394 |||| | || |||||||||| ||| |||| |||||||| || ||||| || || | Sbjct 7674 GCATCAATCCACGCTTCTTCAGCCAGAAAATCGCGCAGAAGCTTCCAGAGAAAAAAATCC 7733 Query 117395 CCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 |||||||||| ||||| || | | ||||| || ||||| Sbjct 7734 CCTCCACACAAGCAAAGGCGATTATCCGCTCAGCAAAGGA 7773 >seq615101 Length=1483 Score = 104 bits (114), Expect = 3e-17 Identities = 249/372 (67%), Gaps = 6/372 (2%) Strand=Plus/Minus Query 9188 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9247 || ||||||||| | || || | || | || |||| |||| ||| | || || Sbjct 1150 CTGACGATCAAACCTGCCAGGCCTCAGCAATGCTGCATCGAGGACATCCGGCCTGTTGGT 1091 Query 9248 CGCGGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAAAGT 9305 ||| || | || | || ||| | |||| | | |||||||||||| || ||||| || Sbjct 1090 CGCAGCCAAAACTATAACACCAGAATTTCCTGA--AAAACCATCCATTTCAGTCAAGAGC 1033 Query 9306 TGGTTAATAGTTTGTTCCCGTTCATCATTCGC-TGGCATACCACCAGCACTGCGTTGCTT 9364 |||||||||||||| || || ||||||||| | || | | || || | | ||| | Sbjct 1032 TGGTTAATAGTTTGCTCTCGCTCATCATTCCCACCGCCGAGC-CCTGCCCCTCTCTGCCT 974 Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 9424 ||||| |||||||| ||||||||||| ||||| || || || ||| | || Sbjct 973 CCCCACAGCATCAATTTCATCAATGAAAACAATGCAAGGCGCCTTCGACTTGGCTTTCTC 914 Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9484 ||| | ||| | || ||| || || ||||| ||||||| ||| ||||| | | || Sbjct 913 AAACAAATCCCTCACTCTTGAAGCTCCAACACCCACAAACAGCTCTACAAACTCGGATGC 854 Query 9485 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 | ||| || ||| || || | ||||| || | || | || | ||| ||||| Sbjct 853 TGCACACGAGAAGAACGGCACGCCTGCCTCACCGGCCACCGCCCTTGCCAAAAGGGTCTT 794 Query 9545 ACCCGTACCTGG 9556 || ||||| || Sbjct 793 TCCGGTACCCGG 782 >seq794097 Length=14469 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| | ||||||||| || || || | ||| || ||||| | || ||||| | || Sbjct 12005 GTGCAAACCCTCATCCCGCGATATCAATTCGTTGGAGAACGTCAACCCGGGCATCAACCC 12064 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| ||||||||||| || |||||||| || Sbjct 12065 GCGCTTCTTAAGCCAGAATATTGCGCAGAAGCTTCCGGAGAAGAATATCCCCTCCACGCA 12124 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA-GCGAGACTTTGTGTCAAACCATTTCATTG 117463 || || || | || ||||||| |||||| || || || || ||| || | Sbjct 12125 GGCGAAGGCGAGCAGACGCTCGGTGAAGGATTCGGAACCCTG----AATCCAGCGCAGGG 12180 Query 117464 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 |||| || ||||| |||| | || || | || |||||||| Sbjct 12181 CCCAATTGGCCTTGTTCTGGACGCAGGGAATGGTGTGGATGGC 12223 >seq551794 Length=11183 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| ||||||||||| || || || | ||| ||| | ||| | ||| Sbjct 4678 TGGGGCCTTGGTGTCCCAGCATTGAAAAGCGTGGGAGATGCATGAGTAAACCATCGCTGG 4737 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||| | ||||| | | || ||||||||||| ||| ||||| ||| | || Sbjct 4738 GACAATAGATGATATGTTTGTATTACTGAATCAATGTCATCCTTGTGGACGCCAACAGCA 4797 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 107347 || | ||| ||||||| || || |||| | | | |||| | | | | ||||| Sbjct 4798 ACTCTCATCAACATGTGCTGAGGCCTTTCAACAACTTTCCCATTAATCTTTAGGAGATAA 4857 Query 107348 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | | ||||||||||| | ||||||||| || | ||| |||| Sbjct 4858 GACCTTTCAAGGGTTTTAAAACCAAAGTAGTCATAGTCAAAGTC 4901 >seq651671 Length=10698 Score = 82.4 bits (90), Expect = 9e-11 Identities = 188/280 (67%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || ||||| || || || || ||||| |||| ||||| ||| | | Sbjct 7015 AAATCCATCCATTTCCGTCAATAGCTGATTGATGGTTTGCTCCCTCTCATCGTTCCC--G 6958 Query 9341 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397 | |||| || || | | ||| | || || ||||| || ||||||||||| || || Sbjct 6957 CC-ACCAAGCCCCGCCCCTCTCTGCCTCCCGACAGCATCTATTTCATCAATGAACACTAT 6899 Query 9398 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 |||||| || | ||| | || || | ||| | || ||| || || || || Sbjct 6898 ACATGGAGCTTTAGCCTTGGCCTTATCGAACAAATCCCTCACTCTTGAAGCCCCAACGCC 6839 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||||| ||| ||||| | || || | ||| | ||| || || | ||| || Sbjct 6838 CACAAACAGCTCTACAAACTCTGAAGCTGCACAAGAAAAGAATGGCACCCCTGCTTCCCC 6779 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557 || | || | || ||||||||||| ||||| || ||| Sbjct 6778 GGCCACCGCCCTCGCCAGAAGAGTCTTCCCCGTGCCAGGC 6739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584123116629120