Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq784841 439 4e-118 seq585748 425 8e-114 seq585752 307 2e-78 seq492030 298 8e-76 seq572160 120 4e-22 seq567144 98.7 1e-15 >seq784841 Length=3474 Score = 439 bits (486), Expect = 4e-118 Identities = 679/967 (70%), Gaps = 2/967 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| |||| ||| ||||||| | ||||| ||| | | | | Sbjct 2977 ACCGAAAACCGTCTTTACATTGGATGGGTTGGTGTTTTGATGATCCCTACCTTATTGACC 2918 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| | ||| ||||| || ||||| || || || Sbjct 2917 GCAACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTGGATATTGATGGTATT 2858 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | ||||| ||| | || ||||| ||||| || | Sbjct 2857 CGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACGATATTATCTCAGGTGCCATTATT 2798 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || ||||| || || || ||||| |||||||||||| || | ||||| Sbjct 2797 CCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAATCTGGGAAGCAACATCCGTTGAT 2738 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 || ||| | ||||| |||| |||| |||| || | | |||||| | ||||| | Sbjct 2737 GAGTGGTTATACAACTGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 2678 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | |||||||| || || | | | |||||| |||||||||| Sbjct 2677 GCTTGTTACATGGGTCGTGAGTGGGAAATTAGTTTCCGTCTGGGTATGCGACCTTGGATT 2618 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 | |||| || | | ||||| | ||||| | || || ||| | | || ||| | Sbjct 2617 GCTTTTGCATATTTAACTCCTGTTGCAGCTGCTATCGCTGTTTTCTTGATCTACCCAATT 2558 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||| ||||||| |||||| || ||||| ||||| || ||||||| ||| Sbjct 2557 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATG 2498 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| ||||| |||||||||||||| || ||||||||||| ||||||||||| || ||| Sbjct 2497 ATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCT 2438 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTA-CATCTTCTCT 215913 ||||| ||||| || || | ||| ||| ||||| ||||| |||| || | ||| | | Sbjct 2437 GGTGTATTCGGCGGCTCCCTATTCAATGCTATGCATGGTTC-CTTGATAACTTCTAGTTT 2379 Query 215914 AATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGA 215973 ||||| || || || || | |||||| || | |||||||| || || |||||||| Sbjct 2378 GATCAGGGAAACCACAGAAAATGAATCTACTAATGAAGGTTACAAATTTGGTCAAGAGGA 2319 Query 215974 GGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGC 216033 ||||| || || || ||||| || || ||||| ||||| || || || |||||||| | Sbjct 2318 AGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATATTCCAATATAC 2259 Query 216034 ATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTAT 216093 ||| |||||||| | | ||||||||| | || || | ||||| | |||| Sbjct 2258 TAGTTTTAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGGTAT 2199 Query 216094 CTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAA 216153 |||| ||||| | ||| | |||||||| |||||| | ||||||||||| ||| | Sbjct 2198 CTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAATTTCTA 2139 Query 216154 CCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAG 216213 ||| ||||| || || || || ||| ||||||||| || | | || | Sbjct 2138 CCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAATCG 2079 Query 216214 AGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTT 216273 || |||||| ||||||| ||||| || ||||| ||||| |||||||| | || || Sbjct 2078 TGCTAACCTTGGTCTGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTGGATTT 2019 Query 216274 GGCTGCT 216280 ||| || Sbjct 2018 AGCTACT 2012 >seq585748 Length=906 Score = 425 bits (470), Expect = 8e-114 Identities = 596/834 (71%), Gaps = 2/834 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 834 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 775 Query 215375 GCTACCACTTGT-TTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAAT 215433 || || |||| || || | || ||||| |||| ||||| || ||||| || || || Sbjct 774 GCAACTT-TTGTATTTATTATTGCTTTCATTACTGCTCCTCCAGTGGATATTGATGGTAT 716 Query 215434 CAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 215493 | || || ||| |||| ||| || | || || ||||| || ||||| ||||| || | Sbjct 715 TCGTGAACCTGTTTCTGGGTCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTAT 656 Query 215494 ACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGA 215553 |||| ||| ||||||| || || || ||||| ||||||||||||||| | ||||| Sbjct 655 TCCTACTTCTGCAGCAATCGATTTGCATTTTTACCCAATCTGGGAAGCAGCATCCGTTGA 596 Query 215554 CGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTAT 215613 || ||| | ||||| ||||| |||| |||| || | | ||| || | ||||| | Sbjct 595 TGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACATCTTACTTGGTGT 536 Query 215614 TTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGAT 215673 || ||| || | ||||||||||| || | | | |||||| |||||||||| Sbjct 535 AGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGAT 476 Query 215674 CTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATT 215733 |||||| || || || ||||| | |||| ||| || ||| | | || ||| | Sbjct 475 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGTTACTGCTGTTTTCTTGATCTACCCAAT 416 Query 215734 CGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACAT 215793 |||||| || ||| ||||||| |||||| || ||||| ||||| || ||||||| || Sbjct 415 CGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTAT 356 Query 215794 GTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGC 215853 | |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || || Sbjct 355 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGC 296 Query 215854 TGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCT 215913 |||||| ||||| || || | ||| | | ||||| ||||| | || | ||| | | Sbjct 295 TGGTGTATTCGGCGGCTCCCTATTCAGTTCTATGCATGGTTCCTTGGTAAGTTCTAGTTT 236 Query 215914 AATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGA 215973 ||||| || || || || | ||||| || | |||||||| || || |||||||| Sbjct 235 GATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGGA 176 Query 215974 GGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGC 216033 ||||| || || || ||||| || || ||||| ||||| || || |||||||||| || Sbjct 175 AGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCAATTTGC 116 Query 216034 ATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTAT 216093 |||||||||||| | | ||||||||||| || || | ||||| | |||| Sbjct 115 TAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTAT 56 Query 216094 CTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAA 216147 || | ||||| | ||| | |||||||| |||||| | ||||||||||| Sbjct 55 CTAGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAA 2 >seq585752 Length=1498 Score = 307 bits (340), Expect = 2e-78 Identities = 464/656 (71%), Gaps = 19/656 (3%) Strand=Plus/Minus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||||||| || | | |||||| || ||||||| |||||| || || || | Sbjct 1458 AGTGGGAACTTAGTTTCCTTCTGGGTATGCGATCTTGGATTGTTGTTGCATATTCAGCTC 1399 Query 215694 CTGT---ATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCT 215750 || | ||||| || ||| | ||| | | || | ||||||| || ||| | Sbjct 1398 TTGCTACAGCTGCTACCGTTG---TTTTCTTAATCTACCAGATCGGTCAAGGAAGTTTTT 1342 Query 215751 CTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTG 215810 |||||| |||||| || ||||| ||||| || ||||||| ||| |||| ||||||||| Sbjct 1341 CTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTA 1282 Query 215811 AGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTT 215870 |||||||||| || ||||||||||| |||||||||||||| |||||||| ||||| || | Sbjct 1281 AGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCT 1222 Query 215871 CATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTG 215930 | || ||| ||| ||| | ||||| |||| || ||| | | || || || || || | Sbjct 1221 CCTTATTCAATGCTATGAATGGTTCCTTTGTAACTTCTAGTTTGATTAGGGAAACCACAG 1162 Query 215931 AGCAAGAATCTCAGAACT-ACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATC 215989 | | ||||| || | | | |||||||| | || |||||||| ||||| || || || Sbjct 1161 AAAATGAATC-CACTAGTGAAGGTTACAAATGTGGTCAAGAGGAAGAAACTTATAATATT 1103 Query 215990 GTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCA 216049 ||||| || || ||||| |||||||| || ||||||||||| | |||||||||||| Sbjct 1102 GTAGCCGCTCATGGTTATTTTGGTCGACTGATCTTCCAATATACTAGTTTCAACAACTCT 1043 Query 216050 AGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATG 216109 | | ||||||||||| || | | ||||| | || ||| | ||| | | Sbjct 1042 CGTTCATTACACTTCTTCCTAGCTTCTTGGCCTGTACTAGGTGTCTAGTTCACTACTTTA 983 Query 216110 GGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGAC 216169 ||| | ||||||||| |||||| | |||| |||||| |||||||| ||| | || || Sbjct 982 GGTATTACAACTATGGTTTTCAACTTAAACGATTTCAATTTCAACCAATCTATAGTTGA- 924 Query 216170 GCATCTGGTAAAG-----TTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTG 216224 | | ||| | ||| ||||| ||| || | | || | || |||| Sbjct 923 -----TAGCCAAGGCCGTTAATTAATACTTAGGCTGATATCATCAATCGTGCTAACCTTG 869 Query 216225 GTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCT 216280 |||||||||| ||||| || | | ||||| |||||||| |||| || |||||| Sbjct 868 GTATGGAAGTTATGCATGAAACTCATGCTCATAACTTCCCTCTAGATTTAGCTGCT 813 >seq492030 Length=881 Score = 298 bits (330), Expect = 8e-76 Identities = 330/440 (75%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 215729 CCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAAC 215788 ||| ||||||| || ||| ||||||| |||||| || ||||| ||||| || |||||| Sbjct 395 CCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAAC 454 Query 215789 TACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGT 215848 | ||| |||| ||| |||||||||||||||| || ||||||||||| ||||||||||| Sbjct 455 TTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGC 514 Query 215849 GTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCT 215908 || |||||||| ||||| || || | ||| ||| ||||| | ||| | || || ||| Sbjct 515 GTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGATTCCTTGGTAACTTCT 574 Query 215909 TCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAA 215968 | | ||||| || || || || | ||||| || | |||||||| || || ||| Sbjct 575 AGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAA 634 Query 215969 GAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAA 216028 ||||| ||||| || || || ||||| || || ||||| ||||| || || ||||||||| Sbjct 635 GAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCAA 694 Query 216029 TACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATT 216088 || || |||||||||||| | | ||||||||||| || || | ||||| | Sbjct 695 TATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTG 754 Query 216089 TGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAAC 216148 |||||||| ||||| | ||| | |||||||| |||||| | ||||||||||| Sbjct 755 GGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCCTTCAACTTAAACGGTTTCAAT 814 Query 216149 TTCAACCAGTCTGTCGTAGA 216168 |||||||| ||||| || || Sbjct 815 TTCAACCAATCTGTAGTTGA 834 >seq572160 Length=4591 Score = 120 bits (132), Expect = 4e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 215828 CACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATG 215887 |||||||| ||||||||||| || |||||||| ||||| || || | ||| || ||| Sbjct 4222 CACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGTTATG 4281 Query 215888 CACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAAC 215947 || ||||| | || || ||| | | ||||| || || | || | ||||| || Sbjct 4282 CATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCCGCTAAT 4341 Query 215948 TACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTAC 216007 | |||||||| || || |||||||| ||||| || | || ||||| || || ||||| Sbjct 4342 GAAGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAGTATTGTAGCCGCTCATGGTTAT 4401 Query 216008 TTTGGTCGCCTCATCTTCCAATACGC 216033 ||||| | || ||||||||||| || Sbjct 4402 TTTGGCCAACTGATCTTCCAATATGC 4427 >seq567144 Length=1974 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| |||||| | ||||||||||| |||||||| ||||| || || || Sbjct 194 ACTATGGCTTTCAACTTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGC 253 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 || ||| ||||||||| || | | || | || |||||||||||||| ||| Sbjct 254 CGTGTAATTAGTACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTTATG 313 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCT 216280 || || ||||| ||||| |||||||| |||| || |||||| Sbjct 314 CATGAACGTAATGCTCATAACTTCCCTCTAGATTTAGCTGCT 355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 737683982826240