Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq731700 104 2e-17 seq500796 102 5e-17 seq621678 93.3 3e-14 seq361176 89.7 3e-13 seq502676 86.0 4e-12 seq588422 84.2 1e-11 seq553100 84.2 1e-11 >seq731700 Length=3081 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| || || | ||| | || |||| || |||||||| ||||| || Sbjct 1338 TTCCTTCTGAATGTTGTAATCAGCGAGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCGAA 1279 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||||| | || | ||| |||||||| |||||| || || Sbjct 1278 GATGAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGAATCTTAGACTTAAC--- 1222 Query 34910 TGCTATCGATT-CACCGG---CCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | |||||| | ||| ||| || |||| ||| ||||| || || ||||| |||| Sbjct 1221 -GTTGTCGATTGTATCGGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCT 1163 Query 34966 TCACAAAGATCTGCAT 34981 | || ||||||||||| Sbjct 1162 TAACGAAGATCTGCAT 1147 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| ||||| |||||||| | || || |||||||| ||||| |||| Sbjct 2287 TTCCTCCCCTCAGCCTCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATATTATAATCCG 2228 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | | | | |||| || ||||| || || ||||| || || | ||||||||| | | Sbjct 2227 CCAAGGTCCTGCCATCCTCTAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGGTCTGGTG 2168 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCC 34928 | | || |||||||| |||||| || || || | || || | ||| | Sbjct 2167 GGATACCTTCCTTGTCTTGAATCTTAGCCTTAAC--AT--TGTCAATGGTGTCCGAACTC 2112 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | ||| ||||| || || || || ||||| || ||||| |||||| Sbjct 2111 TCCACTTCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACGAAGATTTGCATA 2058 >seq500796 Length=7474 Score = 102 bits (112), Expect = 5e-17 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || || || || | ||| | || |||| || || || ||||| ||||| Sbjct 2072 TCTTTCTGGATATTGTAATCTGCAAGAGTCCGGCCATCTTCAAGTTGCTTTCCAGCAAAG 2013 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| | ||||| ||| | || | || ||||| || |||||| |||| ||| Sbjct 2012 ATTAGCCTCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCCTTGA--GAT 1955 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| ||| || ||||| |||| ||||||||||| || || |||||||| Sbjct 1954 --TATCGATGGTATCAGAGGTTTCAACCTCGAGCGTTATGGTTTTACCAGTAAGAGTCTT 1897 Query 34967 CACAAAGATCTGCAT 34981 ||||||||| ||||| Sbjct 1896 CACAAAGATTTGCAT 1882 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || | |||| |||| |||| || || || ||||| ||||| Sbjct 1616 TCTTTCTGGATGTTGTAATCTGCAAGGGTTCGGCCATCTTCAAGTTGCTTTCCAGCAAAG 1557 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | || |||||||| |||||| || || || Sbjct 1556 ATGAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTAGCCTTAAC--AT 1499 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| ||| | ||| || |||| || || ||||| || ||||| ||||| Sbjct 1498 --TATCGATGGTATCAGAGCTCTCTACCTCGAGAGTGATAGTTTTACCAGTGAGGGTCTT 1441 Query 34967 CACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 1440 AACAAAGATCTGCAT 1426 >seq621678 Length=9740 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | ||| || || |||| ||| || || | |||| ||||| |||| || Sbjct 326 AACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCAAGGGTTCGTCCATCCTC 385 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || |||||||| || | || || ||| | || | ||||| ||||| Sbjct 386 GAGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGGATGCCCTCTTTGTCCTG 445 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 |||||| |||||| || |||| || ||| | ||| || || | || |||| Sbjct 446 AATCTTTGCTTTGAC--AT--TATCAATAGTGTCAGAGCTCTCCACCTCCAGAGTAATGG 501 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| || | || |||||||| ||||||||| Sbjct 502 TTTTTCCAGTCAATGTTTTCACAAATATCTGCATA 536 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/198 (70%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || ||||| || | ||| | || | || || ||||| ||||| ||||| Sbjct 1029 TCCTTCTGGATATTATAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAG 1088 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| ||||| |||||| Sbjct 1089 ATGAGACGCTGCTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTGGCCTTGACGT-- 1146 Query 34911 GCTATCGATTC-ACCGGC---CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| ||| | ||| ||| || |||| ||||||||||| || ||||| || || Sbjct 1147 --TATCAATTGTATCGGAGCTCTCGACTTCGAGAGTTATGGTTTTGCCGGTGAGGGTTTT 1204 Query 34967 CACAAAGATCTGCATATT 34984 ||| ||||||||||| || Sbjct 1205 CACGAAGATCTGCATCTT 1222 >seq361176 Length=4428 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || |||| || ||||| ||||||||||| Sbjct 4222 TCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAA 4163 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| ||||| |||||| Sbjct 4162 ATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTG 4103 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||||| || | ||| || || || |||||||| || || || Sbjct 4102 TCGATGGTATCGGAGGATTCAACCTCCAGGGTAATCGTCTTACCCGTGAGGGTTTTGACG 4043 Query 34971 AAGATCTGCATATTCGTAG 34989 ||||||||||| |||| || Sbjct 4042 AAGATCTGCATCTTCGAAG 4024 >seq502676 Length=6550 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| || || | ||| ||| |||| ||||| ||||| || || || Sbjct 1040 TTCCTTCTGAATGTTGTAATCGGCTAGGGTTCTACCATCCTCCAGTTGTTTCCCAGCGAA 981 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||| || | || | || |||||||| ||| || |||||| Sbjct 980 AATCAACCGCTGCTGATCGGGAGGAATACCTTCCTTGTCTTGAATTTTGGCTTTGACATT 921 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| ||| |||||| || | || || ||||| || || |||||||| || Sbjct 920 GTCGATCGTATCAGAACTCTCAACCTCCAGAGTGATCGTTTTGCCGGTAAGAGTCTTGAC 861 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 860 AAAGATCTGCAT 849 >seq588422 Length=1254 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | ||| | || | || || || || || ||||| || Sbjct 95 TTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 154 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | ||||||||||| ||||| ||||| Sbjct 155 GATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--- 211 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | ||||||| || | ||| || || | ||| || ||||| || ||||| |||| Sbjct 212 -GTTATCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCGTTTTGCCGGTGAGGGTCT 270 Query 34966 TCACAAAGATCTGCATA 34982 | || |||||||||||| Sbjct 271 TGACGAAGATCTGCATA 287 >seq553100 Length=2664 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||| |||||| ||| || || || || ||||| | ||| | | |||| |||||||| Sbjct 630 GTGGATTGTGGATTCCTTTTGGATATTGTAGTCTGCAAGAGTCCTGCCATCTTCCAGCTG 571 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||| ||||| || ||||| | ||||| ||| | || | || |||||||| |||||| Sbjct 570 TTTGCCGGCGAAGATTAGCCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGAATCTT 511 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 |||||| | | | ||| |||||| || | || || || ||||| || Sbjct 510 GGTTTTGACATTGTCAGTGGTATCAGAACTCTCAACTTCCAGAGTAATTGTCTTTCCTGT 451 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| |||||||||||||| Sbjct 450 TAATGTCTTAACAAAGATCTGCAT 427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321491021768064