Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq548568 102 9e-17 seq405401 102 9e-17 seq551794 95.1 1e-14 >seq548568 Length=13427 Score = 102 bits (112), Expect = 9e-17 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | ||| || | || ||||| |||||| |||||||| || ||||||| | Sbjct 4436 GTTCCAGCATTGAAAAGGGTGGGAGACGCATGAGTAAACCATCGCTGAGATAACAGATGG 4377 Query 48660 TATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTAA 48718 ||||| | ||||| ||||| ||||| | ||| || ||||| | ||| || | ||| || Sbjct 4376 TATGTCTTTATAACTGAATCAATATCATCCTTG-TGAATACCCACAGAAACCCTCATCAA 4318 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||| |||||||||| || | | || || || || ||| |||| | Sbjct 4317 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 4258 Query 48779 TGTTTTAAAACCAAAATAGT 48798 |||||||||||||| |||| Sbjct 4257 GGTTTTAAAACCAAAGTAGT 4238 >seq405401 Length=1294 Score = 102 bits (112), Expect = 9e-17 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | ||| || | || |||| |||||| |||||||| || ||||||| | Sbjct 309 GTTCCAGCATTGAAAAGGGTGGGAGTCGCATGAGTAAACCATCGCTGAGATAACAGATGG 250 Query 48660 TATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTAA 48718 ||||| | ||||| ||||| |||||| | ||| || ||||| | ||| || | ||| || Sbjct 249 TATGTCTTTATAACTGAATCAATATCCTCCTTG-TGAATACCCACAGAAACCCTCATCAA 191 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||| |||||||||| || | | || || || || ||| |||| | Sbjct 190 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 131 Query 48779 TGTTTTAAAACCAAAATAGT 48798 |||||||||||||| |||| Sbjct 130 GGTTTTAAAACCAAAGTAGT 111 >seq551794 Length=11183 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || |||||||||||| |||||||| || || || | | | Sbjct 4690 GTCCCAGCATTGAAAAGCGTGGGAGATGCATGAGTAAACCATCGCTGGGACAATAGATGA 4749 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 ||||||| || || ||||| || || | ||| || | || | || || | ||| || Sbjct 4750 TATGTTTGTATTACTGAATCAATGTCATCCTTG-TGGACGCCAACAGCAACTCTCATCAA 4808 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||| |||||||||| ||| ||| || || | ||||| || |||| | Sbjct 4809 CATGTGCTGAGGCCTTTCAACAACTTTCCCATTAATCTTTAGGAGATAAGACCTTTCAAG 4868 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 |||||||||||||| |||| || |||||| | |||| Sbjct 4869 GGTTTTAAAACCAAAGTAGTCATAGTCAAAGTCTCTGTCAT 4909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556527846568320