Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq784841 446 5e-121 seq585748 372 9e-99 seq585752 259 1e-64 seq492030 244 3e-60 seq567144 113 1e-20 seq126251 86.0 2e-12 >seq784841 Length=3474 Score = 446 bits (494), Expect = 5e-121 Identities = 691/984 (70%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || || || |||||||| || | |||||| | || || | Sbjct 2998 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGGTTGGTGTTTTG 2939 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| |||||||||| | || || Sbjct 2938 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGTTGCTCC 2880 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || || ||||| ||||| || ||||| || ||||| || || || | || |||||| | Sbjct 2879 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACGA 2820 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || ||||| || | | || | ||| || ||||| | ||||||||||| || Sbjct 2819 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAAT 2760 Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100 ||||||||| | | || |||||| ||||||| | || || ||| |||| ||| | Sbjct 2759 CTGGGAAGCAACATCCGTTGATGAGTGGTTATACAACTGTGGTCCTTATGAACTAATTGT 2700 Query 26101 CTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAG 26160 | ||||||||| | || ||||| || || | |||||||| | || | | Sbjct 2699 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAAATTAGTTTCCG 2640 Query 26161 ACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGC 26220 || || ||| |||| ||||| | |||||||| | | || | | || ||| |||| Sbjct 2639 TCTGGGTATGCGACCTTGGATTGCTTTTGCATATTTAACTCCTGTTGCAGCTGCTATCGC 2580 Query 26221 AGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTAT 26280 || ||||| | || || | || ||||| |||||| |||||| |||||||| || || Sbjct 2579 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 2520 Query 26281 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCC 26340 ||||||||||| ||||||||| | ||||||||||| || || || || || |||||||| Sbjct 2519 TTCTGGTACTTTCAACTTTATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 2460 Query 26341 ATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGG 26400 ||| || ||| || || ||||| || ||||| || | || ||| ||||||||| || Sbjct 2459 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAATGCTATGCATGG 2400 Query 26401 AAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGG 26460 ||| | ||||| | || ||||| ||||| | | || ||| | || Sbjct 2399 TTCCTTGATAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTACTAATGAAGG 2340 Query 26461 CTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 26520 || || ||||| ||||| ||||| || ||||||||||| || || || || || ||||| Sbjct 2339 TTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGG 2280 Query 26521 GAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGC 26580 || | || || || ||| | |||||||| ||| ||||| | || ||||| | || Sbjct 2279 CCGACTGATATTCCAATATACTAGTTTTAACAACTCTCGTTCATTACACTTCTTCTTAGC 2220 Query 26581 TACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAA 26640 | ||||||| || || || || ||| | || || | ||||| |||| ||||| || || Sbjct 2219 TGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 2160 Query 26641 CCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTAC 26700 | |||| ||||| || || |||| || ||||| ||| | | || |||| ||| Sbjct 2159 CTTAAACGGTTTCAATTTCTACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATAC 2100 Query 26701 ATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGC 26760 ||||||||| | | || || |||||||| || | ||||||||||| || |||||||| Sbjct 2099 TTGGGCTGATATCATCAATCGTGCTAACCTTGGTCTGGAAGTTATGCATGAACGTAATGC 2040 Query 26761 TCATAACTTTCCACTTGACTTAGC 26784 ||||||||| || || || ||||| Sbjct 2039 TCATAACTTCCCTCTGGATTTAGC 2016 >seq585748 Length=906 Score = 372 bits (412), Expect = 9e-99 Identities = 588/840 (70%), Gaps = 2/840 (0%) Strand=Plus/Minus Query 25817 ACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTA 25876 || || || || |||||||| || | |||||||| || || | ||||| || |||| Sbjct 840 ACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTA 781 Query 25877 CTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGA 25935 | | || ||| ||| ||||| |||| ||||| | || || || || ||||| || Sbjct 780 TTGACCGCAACTTT-TGTATTTATTATTGCTTTCATTACTGCTCCTCCAGTGGATATTGA 722 Query 25936 TGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGC 25995 ||| || ||||| || ||||| || || || | |||||||||||||| || ||||| || Sbjct 721 TGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTACGGAAACAATATTATCTCAGGTGC 662 Query 25996 AGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCAC 26055 | | || | ||| ||||||| | ||||||||||| ||||||||||| | | Sbjct 661 CATTATTCCTACTTCTGCAGCAATCGATTTGCATTTTTACCCAATCTGGGAAGCAGCATC 602 Query 26056 ACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAAT 26115 | || |||||| ||||||| || || || ||| |||| ||| | | ||| ||||| | Sbjct 601 CGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACATCTTACT 542 Query 26116 AGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACC 26175 || ||||| || || | |||||||||| || | | || || ||| |||| Sbjct 541 TGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACC 482 Query 26176 ATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTA 26235 ||||| |||||||||| |||| || | | || | | || || ||||| | || Sbjct 481 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGTTACTGCTGTTTTCTTGATCTA 422 Query 26236 TCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAA 26295 || |||| ||||| |||||| |||||| |||||||| || || ||||||||||| || Sbjct 421 CCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAA 362 Query 26296 CTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGG 26355 ||||||| | |||||||| || || || || || || ||||||||||| || ||| || Sbjct 361 CTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGG 302 Query 26356 TGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTC 26415 || ||||| || ||||| || | || ||| | ||||||| || ||||| | ||| Sbjct 301 CGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTTCTATGCATGGTTCCTTGGTAAGTTC 242 Query 26416 CTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCA 26475 | || ||||| ||||| | | || ||| | || || || ||||| || Sbjct 241 TAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCA 182 Query 26476 AGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCA 26535 ||| ||||| || ||||||||||| || || || || || ||||| || | || || || Sbjct 181 AGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCA 122 Query 26536 GTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGT 26595 | ||| ||||| || ||| ||||| | || ||||| || ||| ||||||| || || Sbjct 121 ATTTGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGT 62 Query 26596 TGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAA 26655 || || | | | || || | ||||| |||| ||||| || ||| |||| ||||| || Sbjct 61 GGGTATCTAGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAA 2 >seq585752 Length=1498 Score = 259 bits (286), Expect = 1e-64 Identities = 446/644 (69%), Gaps = 3/644 (0%) Strand=Plus/Minus Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201 |||||||||| || | || || ||| || | ||||| ||||||||||| |||| | Sbjct 1458 AGTGGGAACTTAGTTTCCTTCTGGGTATGCGATCTTGGATTGTTGTTGCATATTCAGCTC 1399 Query 26202 CA-CTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGT 26260 ||| | || ||| || || |||||| | || | |||| ||||| |||||| | Sbjct 1398 TTGCTA-CAGCTGCTACCGTTGTTTTCTTAATCTACCAGATCGGTCAAGGAAGTTTTTCT 1340 Query 26261 GATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 26320 ||||| |||||||| || || ||||||||||| ||||||||| | |||||||| || | Sbjct 1339 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTAAG 1280 Query 26321 CATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCT 26380 || || || || ||||||||||| || ||| ||||| ||||| || ||||| || | Sbjct 1279 CACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 1220 Query 26381 CTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAG 26440 | ||| ||||||| | || || || ||||| | ||| ||||| ||||| Sbjct 1219 TTATTCAATGCTATGAATGGTTCCTTTGTAACTTCTAGTTTGATTAGGGAAACCACAGAA 1160 Query 26441 GAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTC 26500 | | || | | | || || || | ||| ||||| ||||| || ||||||||||| Sbjct 1159 AATGAATCCACTAGTGAAGGTTACAAATGTGGTCAAGAGGAAGAAACTTATAATATTGTA 1100 Query 26501 GCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGT 26560 || || || || || ||||| || | || || || ||| | ||||| || ||| ||| Sbjct 1099 GCCGCTCATGGTTATTTTGGTCGACTGATCTTCCAATATACTAGTTTCAACAACTCTCGT 1040 Query 26561 TCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGT 26620 || | || ||||| || ||| ||||||| || | || | | | | || || | ||| Sbjct 1039 TCATTACACTTCTTCCTAGCTTCTTGGCCTGTACTAGGTGTCTAGTTCACTACTTTAGGT 980 Query 26621 ATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTT 26680 || || |||| || ||| |||| | ||| || || ||||| || |||| ||| Sbjct 979 ATTACAACTATGGTTTTCAACTTAAACGATTTCAATTTCAACCAATCTATAGTTGATAGC 920 Query 26681 AATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAA 26740 | || | |||| ||| | ||||||| | | || || |||||||| || | ||| Sbjct 919 CAAGG-CCGTTAATTAATACTTAGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAA 861 Query 26741 GTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 |||||||| || | ||||||||||||| || || || ||||| Sbjct 860 GTTATGCATGAAACTCATGCTCATAACTTCCCTCTAGATTTAGC 817 >seq492030 Length=881 Score = 244 bits (270), Expect = 3e-60 Identities = 336/470 (71%), Gaps = 0/470 (0%) Strand=Plus/Plus Query 26241 TCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTA 26300 |||| ||||| |||||| |||||| |||||||| || || ||||||||||| ||||||| Sbjct 399 TCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTA 458 Query 26301 TGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTG 26360 || | |||||| | || || || || || || ||||||||||| || ||| || || | Sbjct 459 TGATTGTATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAG 518 Query 26361 CTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCAC 26420 |||| || ||||| || | || ||| ||||||||| | ||||| ||||| Sbjct 519 CTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGATTCCTTGGTAACTTCTAGTT 578 Query 26421 TTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATG 26480 | || ||||| ||||| | | || ||| | || || || ||||| ||||| | Sbjct 579 TGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGG 638 Query 26481 AAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATG 26540 |||| || ||||||||||| || || || || || ||||| || | || || || |||| Sbjct 639 AAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCAATATG 698 Query 26541 CGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCA 26600 | ||||| || ||| ||||| | || ||||| || ||| ||||||| || || || | Sbjct 699 CTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTA 758 Query 26601 TATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTA 26660 | ||| | || || | ||||| |||| ||||| || ||| |||| ||||| || || | Sbjct 759 TCTGGTTCACTGCTTTAGGTATTAGCACTATGGCCTTCAACTTAAACGGTTTCAATTTCA 818 Query 26661 ACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGAT 26710 |||| || ||||| ||| | | || |||| ||| ||||||||| Sbjct 819 ACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGAT 868 >seq567144 Length=1974 Score = 113 bits (124), Expect = 1e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 26618 GGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT 26677 ||||| |||| ||||| || ||| |||| ||||| || || ||||| || ||||| ||| Sbjct 185 GGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAATTTCAACCAATCTGTAGTTGAT 244 Query 26678 GTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTT 26737 | | || |||| ||| ||||||||| | | || || |||||||| || | Sbjct 245 AGTCAAGGCCGTGTAATTAGTACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATG 304 Query 26738 GAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| || ||||||||||||||||| || || || ||||| Sbjct 305 GAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATTTAGC 351 >seq126251 Length=485 Score = 86.0 bits (94), Expect = 2e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25925 GTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATA 25984 || ||||| ||||| || |||| || |||| | || | ||| ||| |||||||||| Sbjct 1 GTGGATATTGATGGTATTTGTGAACCTATTTCTAGGTCTTGAATTTACAGAAACAATATT 60 Query 25985 ATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGG 26044 || ||| | || | | || | | | || ||||| | ||||||||||| |||||| Sbjct 61 ATCTCATGTGCCATTATTCCTACTTTTGCAGCTATCGGTTTGCATTTTTACCCAATCTGG 120 Query 26045 GAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTC 26104 ||||| | | || ||||| ||||||| || || || ||| |||| ||| | | Sbjct 121 GAAGCAACATCCATTGATAAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTA 180 Query 26105 CACTTCTTAATAGGAGTAGC 26124 ||||| ||| | || ||||| Sbjct 181 CACTTTTTACTTGGTGTAGC 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145342451651712