Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq784841 506 6e-139 seq585748 443 6e-120 seq585752 331 3e-86 seq492030 262 1e-65 seq567144 116 1e-21 seq572160 84.2 7e-12 seq572830 80.6 8e-11 >seq784841 Length=3474 Score = 506 bits (560), Expect = 6e-139 Identities = 710/989 (72%), Gaps = 12/989 (1%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| ||| || |||||||| |||||||| ||||| ||||| ||||||| ||||||||| Sbjct 2016 GCTAAATCCAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCAGACCAAGGTTA 2075 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGC-TAGAGT--CAACGACT 5311 ||||| || | || ||| |||||||| || || || || | || | |||| || Sbjct 2076 GCACGATTGATGATATCAGCCCAAGTATTAA---TTACACGGCCTTGACTATCAACTACA 2132 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || | ||| || || ||||| | || |||||||||||| || || | || || Sbjct 2133 GATTGGTAGAAATTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTG 2192 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || || ||||||| ||| | |||||| ||||| ||| |||||| Sbjct 2193 AACCAGATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTA 2252 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || |||| ||| ||||| || |||| ||||| || |||||||| || ||||| ||||| Sbjct 2253 AAACTAGTATATTGGAATATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAA 2312 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCA 5551 |||||||||||||| || ||||| || || | || ||| | | || ||||| Sbjct 2313 GTTTCTTCCTCTTGACCAAATTTGTAACCTTCATTAGTAGATTCATTTTCTGTGGTTTCC 2372 Query 5552 CGAATGAGCGAAGAAGTAA-CAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | |||||| | |||| |||||||||||| ||| | | || ||||| Sbjct 2373 CTGATCAAACTAGAAGTTATCAAGGAA-CCATGCATAGCATTGAATAGGGAGCCGCCGAA 2431 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 ||| ||||| || || | |||||| || || ||||||||||| ||||| || || ||||| Sbjct 2432 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAA 2491 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||||||||| ||||||||||| || || ||||||||||||||| |||||||| Sbjct 2492 TACAATCATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCC 2551 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGC 5790 || || | ||||| | || || || | | || || ||||| || | | ||||||| Sbjct 2552 TTGACCAATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCAACAGGAGTTAAATATGC 2611 Query 5791 TACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTA 5850 | |||||| |||||||| || | | | |||||| |||||| | || |||| ||| Sbjct 2612 AAAAGCAATCCAAGGTCGCATACCCAGACGGAAACTAATTTCCCACTCACGACCCATGTA 2671 Query 5851 AGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAG 5910 | || | ||||| | |||||| | || | |||| || || || | ||||| | Sbjct 2672 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACAGTTGTATAA 2731 Query 5911 CCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTG 5968 ||| ||||| | ||| | |||||||||||| || || || || || || || || Sbjct 2732 CCACTCATCAACGGAT--GTTGCTTCCCAGATTGGGTAAAAATGCAAACCGATAGCTGCA 2789 Query 5969 GAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACG 6028 || | || | || ||| ||||| || || | ||||||||| |||||||| || | || Sbjct 2790 GAAGTAGGAATAATGGCACCTGAGATAATATCGTTTCCATAAAGTAGAGACCCAGAAACA 2849 Query 6029 GGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCA 6088 |||||||| || || || || || ||||| || ||| | | ||| || | |||||| || Sbjct 2850 GGTTCACGAATACCATCAATATCCACTGGAGGAGCAACAATGAAGGCAATAATAAATACA 2909 Query 6089 GTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGG 6148 | ||||||||| || | | || ||||| || ||||||| ||| || | || || ||| Sbjct 2910 GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAACCCATCCAATGTAAAGACGG 2969 Query 6149 TTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || | |||||| || | ||||| |||||| Sbjct 2970 TTTTCGGTGCTGGTTATCCAGTTACAGAA 2998 >seq585748 Length=906 Score = 443 bits (490), Expect = 6e-120 Identities = 615/857 (72%), Gaps = 6/857 (1%) Strand=Plus/Plus Query 5324 TTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAA 5383 || || ||||| | || |||||||||||| || || | || || | | | || | Sbjct 2 TTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACTAGATACCC 61 Query 5384 ACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATAC 5443 || || ||||||| ||| |||||||| ||||| ||| ||||| || |||||| | Sbjct 62 ACTACAGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCAAAT 121 Query 5444 TGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCT 5503 |||||||| |||| ||||| || |||||||| || ||||| ||||| |||||||||||| Sbjct 122 TGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCCTCT 181 Query 5504 TGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAA 5563 || || ||||| || || | || || | | || ||||| | || | | Sbjct 182 TGACCAAATTTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 241 Query 5564 GAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACA 5623 ||| | || | |||||||||| | ||| | | || |||||||| ||||| || Sbjct 242 GAACTTACCAAGGAACCATGCATAGAACTGAATAGGGAGCCGCCGAATACACCAGCTACG 301 Query 5624 CCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAG 5683 || | |||||| || || ||||||||||| ||||| || ||||||||||| | ||||||| Sbjct 302 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAG 361 Query 5684 TTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGG 5743 || ||||||||||| || || ||||||||||||||| |||||||| || |||| ||| Sbjct 362 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG 421 Query 5744 TATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCA 5802 || | || || || | |||| | || ||||| || ||||||||||| || |||||| Sbjct 422 TAGATCAAGAAAACAGCAGTA-ACAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCA 480 Query 5803 TGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACC 5862 |||||||| || | | | ||||||||||||| | || |||| |||| || | ||| Sbjct 481 AGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC 540 Query 5863 AATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA- 5921 || | || ||| | || | |||| || || || || ||||| | ||| ||||| | Sbjct 541 AAGTAAGATGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCACTCATCAAC 600 Query 5922 -GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACA 5980 ||| |||||||||||||| || || || || || | ||||| || | || | | Sbjct 601 GGAT--GCTGCTTCCCAGATTGGGTAAAAATGCAAATCGATTGCTGCAGAAGTAGGAATA 658 Query 5981 ACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATG 6040 | ||| ||||| || || |||||||| || |||||||| || | || |||||||| || Sbjct 659 ATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGACCCAGAAACAGGTTCACGAATA 718 Query 6041 CCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTT 6100 || || || || ||||| || |||| | ||| || | |||||| || ||||||||| Sbjct 719 CCATCAATATCCACTGGAGGAGCAGTAATGAAAGCAATAATAAATACAAAAGTTGCGGTC 778 Query 6101 AAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTA 6160 || | | || ||||| || ||||||||||| || | || || ||||| | |||||| Sbjct 779 AATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTG 838 Query 6161 GTAACCCAGTCACAGAA 6177 || | | ||| |||||| Sbjct 839 GTTATCGAGTTACAGAA 855 >seq585752 Length=1498 Score = 331 bits (366), Expect = 3e-86 Identities = 493/691 (71%), Gaps = 15/691 (2%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| |||| ||| || |||||||| ||||||| ||| ||||| |||||||||||||| Sbjct 813 AGCAGCTAAATCTAGAGGGAAGTTATGAGCATGAGTTTCATGCATAACTTCCATACCAAG 872 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 ||| ||||| || | || ||| ||| |||| || | | || |||| ||||| Sbjct 873 GTTAGCACGATTGATGATATCAGCCTAAGTATTAATTAA-CGGCCTTGGCTA---TCAAC 928 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 | || || ||||| || || |||| | || ||| ||||||| | || || | || Sbjct 929 TATAGATTGGTTGAAATTGAAATCGTTTAAGTTGAAAACCATAGTTGTAATACCTAAAGT 988 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | | | | | | || ||||||| ||| |||||||| ||||| ||| || Sbjct 989 AGTGAACTAGACACCTAGTACAGGCCAAGAAGCTAGGAAGAAGTGTAATGAACGAGAGTT 1048 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 ||| || |||| ||| |||||||| |||| ||||| || |||||||| || ||||| || Sbjct 1049 GTTGAAACTAGTATATTGGAAGATCAGTCGACCAAAATAACCATGAGCGGCTACAATATT 1108 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCAT-AGTTCTGAGAAGTAAGCCCAGTTG 5546 ||| |||||||||||||| || |||| || || | | | || || | | || | Sbjct 1109 ATAAGTTTCTTCCTCTTGACCACATTTGTAACCTTCACTAGTG-GATTCATTTTCTGTGG 1167 Query 5547 TTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCAC 5606 |||| | ||| | |||||| |||| |||| ||||||| ||| || | || | Sbjct 1168 TTTCCCTAATCAAACTAGAAGTTACAAAGGAACCATTCATAGCATTGAATAAGGAGCCGC 1227 Query 5607 CGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCT 5666 ||||||| ||||| ||||| | |||||| || || ||||||||||| ||||| | |||| Sbjct 1228 CGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTTAGCCT 1287 Query 5667 GGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAAC 5726 ||||||| | ||||||||| ||||||||||| || || ||||||||||||||| |||| Sbjct 1288 GGAATACAATCATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAAC 1347 Query 5727 TTCCCTGTCCGAAAGGGTATACTAAAAATAC-TGAGTAG--GCTGCGGCAACCGGTGCTG 5783 |||| || |||| |||| | ||| || || |||| |||| |||| | |||| Sbjct 1348 TTCCTTGACCGATCTGGTAGATTAAGAAAACAACGGTAGCAGCTGTAGCAA---GAGCTG 1404 Query 5784 AATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTC 5843 ||||||| || |||||| | |||||| || | | ||||||||||||| | | | Sbjct 1405 AATATGCAACAACAATCCAAGATCGCATACCCAGAAGGAAACTAAGTTCCCACTCATGAC 1464 Query 5844 CCAAGTAAGCTGCGATACCAATAAGGAAGTG 5874 ||| |||| || | ||||| | |||||| Sbjct 1465 CCATGTAACAAGCTACACCAAGTAAGAAGTG 1495 >seq492030 Length=881 Score = 262 bits (290), Expect = 1e-65 Identities = 322/437 (74%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 5303 TCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362 ||||| || || || ||||| || || ||||| | || || ||||||||| || || Sbjct 834 TCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTTGAAGGCCATAGTGCTAATACCT 775 Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422 | || || | ||| || | || || ||||||| ||| |||||||| ||||| ||| Sbjct 774 AAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGA 715 Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 5482 ||||| || |||||||| |||||||| |||| ||||| || |||||||| || ||| Sbjct 714 GAGTTGTTGAAACTAGCATATTGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTACA 655 Query 5483 ATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCA 5542 || ||||| |||||||||||||| || ||||| || || | || || | | Sbjct 654 ATATTATAAGTTTCTTCCTCTTGACCAAATTTGTAACCTTCATTAGCGGATTCATTTTCT 595 Query 5543 GTTGTTTCACGAATGAGCGAAGAAG-TAACAAGACTTCCATGCATAGCAGCGAACAAAGC 5601 || ||||| | || | ||||| || |||| | ||||||||||| ||| | | Sbjct 594 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAAT-CATGCATAGCACTGAATAGGGA 536 Query 5602 TCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTC 5661 || |||||||| ||||| || || | |||||| || || ||||||||||| ||||| || Sbjct 535 GCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTC 476 Query 5662 TGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACT 5721 |||| |||||| | ||||||||| ||||||||||| || || ||||||||||||||| Sbjct 475 AGCCTAGAATACAATCATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGA 416 Query 5722 GAAACTTCCCTGTCCGA 5738 |||||||| || |||| Sbjct 415 AAAACTTCCTTGACCGA 399 >seq567144 Length=1974 Score = 116 bits (128), Expect = 1e-21 Identities = 127/166 (77%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| |||| ||| || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 355 AGCAGCTAAATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 296 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG-CTAGA--GTCAAC 5307 ||| ||||| || | || ||| |||||||| | ||| || | || || ||||| Sbjct 295 GTTAGCACGATTGATGATATCAGCCCAAGT---ACTAATTACACGGCCTTGACTATCAAC 239 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTG 5353 || || || ||||| || || ||||| | || |||||||||||| Sbjct 238 TACAGATTGGTTGAAATTGAAACCGTTTAAGTTGAAAGCCATAGTG 193 >seq572160 Length=4591 Score = 84.2 bits (92), Expect = 7e-12 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 |||||||| |||||||| ||| ||||| || |||||||| || ||||| |||| ||| Sbjct 4430 CTAGCATATTGGAAGATCAGTTGGCCAAAATAACCATGAGCGGCTACAATACTATAAGTT 4371 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGA 5554 ||||||||||| || ||||| || || | || || | | | ||||| | Sbjct 4370 TCTTCCTCTTGACCAAATTTGTAACCTTCATTAGCGGATTCATTTTCTATGGTTTCCCTG 4311 Query 5555 ATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACC 5614 || | |||||| || | ||||||||| || ||| | | || |||||||| Sbjct 4310 ATCAAACTAGAAGTTACCAAGGAACCATGCATAACACTGAATAGGGAGCCGCCGAATACA 4251 Query 5615 CCAGCAACACCGAGCATGTGGAACGGATG 5643 ||||| || || | |||||| || || || Sbjct 4250 CCAGCTACGCCTAACATGTGAAATGGGTG 4222 >seq572830 Length=4883 Score = 80.6 bits (88), Expect = 8e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 5444 TGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCT 5503 |||||||| |||| ||||| || |||||||| || ||||| ||||| |||||||||||| Sbjct 641 TGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCCTCT 700 Query 5504 TGGCCGAATTTATATCC 5520 || || ||||| || || Sbjct 701 TGACCAAATTTGTAACC 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151209783022368