Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq621678 147 2e-30 seq553100 125 5e-24 seq659339 107 1e-18 seq500796 107 1e-18 seq502676 96.9 3e-15 seq731700 91.5 1e-13 seq690132 87.8 1e-12 >seq621678 Length=9740 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| ||| ||||||| |||||||||| || |||| | || || Sbjct 327 ACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCAAGGGTTCGTCCATCCTCG 386 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||||||||| | ||||||||| | || | |||||| ||||| | Sbjct 387 AGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGGATGCCCTCTTTGTCCTGA 446 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| ||| | | | || || || ||||||||||| ||||| |||||| Sbjct 447 ATCTTTGCTTTGACATTATCAATAGTGTCAGAGCTCTCCACCTCCAGAGTAATGGTTTTT 506 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| ||||| |||||||| Sbjct 507 CCAGTCAATGTTTTCACAAATATCTGCAT 535 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | ||| ||| |||||||| |||||||| | | | | | | || ||| Sbjct 555 ACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCCAAAGTCCTTCCATCTTCC 614 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || ||||| || || | ||| ||||||| |||| || || ||||| | Sbjct 615 AATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGAATTCCTTCTTTGTCCTGA 674 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || |||||| | | | | || || ||| || |||| ||||| ||||| Sbjct 675 ATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAACTGTTTTG 734 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | ||||| || |||||||||||| Sbjct 735 CCAGTTAGGGTTTTGACGAAAATCTGCATC 764 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||||| ||| || || || ||||||||||| | ||| ||| | || ||||| || Sbjct 788 ATGTAAAGTGGATTCCTTCTGGATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAATTG 847 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || || || || |||| || ||||||||| | |||| || |||||||| ||||| Sbjct 848 TTTGCCAGCGAAAATCAATCTCTGTTGATCGGGTGGAATACCTTCCTTGTCCTGGATCTT 907 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || || | | | | || || ||| ||||| | |||||||| || ||||| Sbjct 908 GGCCTTAACGTTATCAATCGTATCAGAACTCTCAACCTCGAGAGTAATCGTCTTCCCCGT 967 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 | ||||| ||||| ||||||||| Sbjct 968 TAGGGTTTTGACAAAGATCTGCATC 992 >seq553100 Length=2664 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || | || ||| ||||||||||| ||| ||||| |||| ||||||||| | Sbjct 881 CCGCCTCTCAACCTCAAAACCAAATGTAGAGTGGAATCTTTCTGAACATTGTAATCTGCC 822 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | | | | || | ||||||||||||||||||||| ||||| || | | ||| Sbjct 821 AGAGTCCTCCCATTTTCGAGCTGCTTACCGGCAAATATCAGGCGCTGCTGTTTGTTAGGA 762 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| |||||| || || | || | ||||| |||||| Sbjct 761 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGACTGCGTCTGAACTGTCCACC 702 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| |||||||| ||||| ||||| || || |||||||| Sbjct 701 TCTAGGGTAATGGTTTTTCCAGTCAAGGTTTTGACGAAGATCTGCAT 655 >seq659339 Length=4894 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || ||| || |||||||| || ||||| | ||| |||| |||| || Sbjct 271 ACCAGATGCAGAGTGGAGTCCTTTTGAATTTTATAATCTGCAAGAGTTCGTCCGTCCTCA 212 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||||||||| | || |||||| | || | | ||| ||||| | Sbjct 211 AGCTGCTTGCCAGCAAATATCAGCCTCTATTGATCTGGTGGGATGTACTCTTTGTCCTGA 152 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 | |||| ||| ||| | | | | || || | ||||||||| ||||| ||||| Sbjct 151 ACCTTTGCTTTGACATTATCAATTGTGTCAGAGCTCCCCACCTCCAGAGTAATGGTTTTA 92 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| |||| ||||| |||||||| Sbjct 91 CCGGTCAATATTTTCACAAATATCTGCAT 63 >seq500796 Length=7474 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | ||||| |||| ||| || || |||||| || || |||||||| | Sbjct 2792 CCTCCCCTCAAACGCAATACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCA 2733 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | | || || | |||||| || ||||| |||| ||||||||||| | || Sbjct 2732 AGTGTCCTACCATCTTCAAGCTGCTTCCCAGCAAAGATCAAACGCTGTTGATCAGGAGGG 2673 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || |||||| || ||| | | | ||||| || ||| Sbjct 2672 ATGCCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCAATTGTGTCTGAACTTTCAACC 2613 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| |||||||| ||||| |||||||| || || || |||||||| Sbjct 2612 TCCAAGGTAATCGTCTTTCCTGTCAAAGTCTTCACGAAGATCTGCAT 2566 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| || || ||| ||| || || ||||||||||| | ||| | || | || || Sbjct 3002 ACCAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCTGCCAGAGTGCGTCCATCTTCA 2943 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCT 48676 | |||||| || ||||| || || || |||||||||| ||||| | || |||||||| Sbjct 2942 AGCTGCTTCCCAGCAAAAATGAGGCGTTGTTGATCCGGTGGGATC-CCTTCCTTGTCTTG 2884 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||| ||| || ||| | | | | ||||| ||| ||||||| || || ||||| Sbjct 2883 AATTTTTGCCTTCACATTATCAATTGTATCTGAGCTCTCAACCTCCAAAGTGATTGTTTT 2824 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||||||||| ||||| || |||||| Sbjct 2823 CCCAGTCAAAGTTTTGACAAATATTTGCATC 2793 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||||||||| | ||| ||| | | || || | ||||| || ||||| Sbjct 1844 TCTTTTTGAATATTGTAATCTGCAAGAGTTCTACCATCTTCAAGTTGCTTTCCAGCAAAA 1785 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | |||| || ||||| || |||||| || ||| Sbjct 1784 ATAAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTATCTTGAATCTTAGCCTTGACATTG 1725 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||| ||||||| || || ||||| || || | |||||||||| Sbjct 1724 TCGATGGTATCGGAGCTCTCAACCTCCAGAGTGATGGTTTTACCGGTAAGAGTTTTTACA 1665 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 1664 AAAATCTGCAT 1654 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| ||||||||||||| || | || | || || | ||||| || ||||| Sbjct 2300 TCCTTTTGGATATTGTAATCAGCAAGGGTACGGCCATCTTCAAGTTGCTTCCCAGCAAAG 2241 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| ||| || || | |||| || ||||| || |||||| ||| ||| Sbjct 2240 ATCAGTCTCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTTTGCTTTGACATTG 2181 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| ||| ||||| | ||||| |||||||| || | ||| || ||| Sbjct 2180 TCAATGGTATCTGAGCTCTCAACCTCGAGAGTAATTGTTTTTCCAGTAAGAGTCTTCACA 2121 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 2120 AAAATTTGCAT 2110 >seq502676 Length=6550 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||||| |||||||| | ||| | | |||| ||||| || || || ||||| Sbjct 1268 CTCCTTTTGAACGTTGTAATCTGCCAGAGTCCTCCCGTCTTCCAATTGTTTGCCTGCAAA 1209 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||||| | ||| ||||| | |||| ||| || ||||| ||| || ||| || Sbjct 1208 TATCAGCCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTCACGTT 1149 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| || |||| ||||| ||||| || |||| ||||| || Sbjct 1148 ATCAATTGTGTCGGAGCTCTCAACTTCCAGAGTAATTGTTTTACCGGTCAGGGTTTTGAC 1089 Query 48755 AAAAATCTGCATC 48767 ||||||||||||| Sbjct 1088 AAAAATCTGCATC 1076 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| || || ||||| ||||| | || | || |||| || | |||| Sbjct 823 TGAAGCGTGGACTCCTTCTGGATATTATAATCCGCCAGCGTCCGGCCGTCCTCTAGCTGC 764 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || || || ||||||||||||| |||| ||||||||||| ||||| Sbjct 763 TTTCCAGCGAAGATGAGACGCTGTTGATCCGGCGGAATCCCCTCCTTGTCTTGGATCTTC 704 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | | || || ||| ||||| | |||||||| || ||||| Sbjct 703 GCCTTAACGTTATCAATCGTATCCGAACTCTCAACCTCTAAAGTAATCGTCTTCCCCGTT 644 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | ||||| || || ||||||||| Sbjct 643 AGGGTTTTGACGAAGATCTGCATC 620 >seq731700 Length=3081 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||||| || ||| ||| |||||||| |||||||||| || | || Sbjct 1592 AGGCGCAGAACCAAATGGAGGGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTACGG 1533 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || || || || ||||| | |||||| |||| || | |||||| Sbjct 1532 CCATCCTCGAGCTGTTTCCCAGCGAAGATCAGCCTCTGTTGGTCCGGTGGGATTCCCTCC 1473 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| || | | | ||||| |||||||| | ||| Sbjct 1472 TTGTCCTGGATCTTGGCTTTAACGTTGTCAATTGTATCTGAGCTTTCCACCTCAAGGGTA 1413 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| ||||| |||||||| Sbjct 1412 ATGGTCTTCCCTGTGAGGGTTTTGACAAAGATCTGCAT 1375 >seq690132 Length=1697 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGAT-----CGT 48612 |||| ||| || ||| || |||||||| || ||||| | ||| |||| | | | Sbjct 1276 ACCAGATGCAGAGTGGAGTCCTTTTGAATGTTATAATCTGCAAGAGTTCGTTTCGTCCTT 1217 Query 48613 CGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGT 48672 | || | |||||| || ||||||||||| | || |||||| | || | || ||| || | Sbjct 1216 CCTCAAGCTGCTTGCCAGCAAATATCAGCCTCTATTGATCTGGTGGGATGCACTCTTTAT 1157 Query 48673 CGCTAATCTTTTG-TTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 | || | | |||| ||| ||| | | | | || || | ||||||||| ||||| Sbjct 1156 C-CTGAGCCTTTGCTTTGACATTATCAATTGTGTCAGAGCTCCCCACCTCCAGAGTAATG 1098 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| || | ||||| |||||||| Sbjct 1097 GTTTTACCGGTCAATATTATCACAAATATCTGCAT 1063 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | ||| ||| |||||||| ||||||| | | | || || | ||| Sbjct 1043 ACCAAATGCAAAGTGGACTCCTTTTGAATGCTGTAATCCGCCAAAGTTTTTTCAACTTCC 984 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || ||| | || || | ||| |||| || |||| || || ||||| | Sbjct 983 AATTGTTTGCCTGCACAGATGAGCCTCTGCTGATTCGGTGGAATCCCTTCTTTGTCCTGA 924 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||||| | | | | || || ||| || |||| |||||| ||||| Sbjct 923 ATTTTGGCTTTTACATTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAATTGTTTTG 864 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | | |||||| || |||||||||||| Sbjct 863 CCAATTAGAGTTTTGACGAAAATCTGCATC 834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377249977371024