Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq794097 165 2e-35 seq677466 127 4e-24 seq611863 118 2e-21 >seq794097 Length=14469 Score = 165 bits (182), Expect = 2e-35 Identities = 387/580 (67%), Gaps = 17/580 (3%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| || ||||| | |||||| || || ||||| || | |||||||| Sbjct 11982 TACAGCAGGCACGCGAAGTCGCAGTGCAAACCCTCATCCCGCGATATCAATTCGTTGGAG 12041 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || | || ||||| | ||| | || || |||||||| ||||| ||| || Sbjct 12042 AACGTCAACCCGGGCATCAACCCGCGCTTCTTAAGCCAGAATATTGCGCAGAAGCTTCCG 12101 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || |||||||| ||||| ||| || | ||| ||| || || Sbjct 12102 GAGAAGAATATCCCCTCCACGCAGGCGAAGGCGAGCAGACGCTCGGTGAAGGATTCGGAA 12161 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 |||| |||||| || ||||| | ||||| |||| || ||| || || || | Sbjct 12162 CC--CTGA-ATCCAGCGCAGGGCCCAATTGGCCTTGTTCTGGACGCAGGGAATGGTGTGG 12218 Query 48362 ATGGCCCGGAAGAGCTT---CTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCA-- 48416 ||||| ||||||||| | ||| ||| | | ||| | |||||| || || Sbjct 12219 ATGGCGCGGAAGAGCATGGCCTT---CTCGGCAGAATCCTTGATATAGGTCTCGATCAAA 12275 Query 48417 --GCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGC 48474 ||| ||||||||| ||||| | ||||| || || |||||||| ||||||||||| Sbjct 12276 AGGCT----GTACATCTCGGAGTGGATGTTCTCGATGGCAATCTGGAAGCCGTAGAAGGC 12331 Query 48475 CCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTAT 48534 | |||||| | ||||| || || | ||| | | |||||||| ||| || Sbjct 12332 GCGGGCCTCGGAGACCTGGACCTCGTTCATGAAGCGGGCGGCAAGATTCTCGAGGACGAT 12391 Query 48535 CCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGT 48594 || || ||||| || |||||||| ||||| || || | |||||| |||| | || Sbjct 12392 GCCGTCGGAAGCGGCGAAGAAGGCGAGGACGTGCTTGATGAAATGCTTCTCGGAGGGGAG 12451 Query 48595 GAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA 48654 ||| | | |||| | ||| | | ||| || ||||| || ||||||||||||| Sbjct 12452 GAGGGAGTCCCAGTGGGAGAGGTCCTGGGCCAAATCGACTTCGTCGGCAGTCCAGAAGGA 12511 Query 48655 CGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATAG 48694 || | || || |||||||| |||| || | ||| ||| Sbjct 12512 GGCCTGGGCCTTCTTGTACATTTCCCAAATTTGCGGGTAG 12551 >seq677466 Length=8805 Score = 127 bits (140), Expect = 4e-24 Identities = 187/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||| | |||||| || ||||| ||||| ||||||||||| | |||||| Sbjct 7900 GTACATCTCGGAGTGGATATTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGGGCCTC 7959 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 | | ||||| || || | ||| | || || |||||||| || || ||||| | Sbjct 7960 AGAGACCTGGACCTCCTTCATGAAAC-GGCCGGCGAGATTCTCGAGAACGATGCCATCGG 8018 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 | || || |||||||| ||||| || || | ||| |||||||||| | | ||||| | | Sbjct 8019 AGGCGGCGAAGAAGGCGAGGACGTGCTTGATGAAGTGGCGCTCGTCGGGAGTGAGGGAGT 8078 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 |||| | | || | | || || || || || | ||||||||||| || | Sbjct 8079 CCCAGTGGCGAATATCCTGGGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGG 8138 Query 48663 CTTTTTTGTACATGCCCCATAT 48684 |||| |||||||| |||| || Sbjct 8139 CTTTCTTGTACATCTCCCAGAT 8160 >seq611863 Length=950 Score = 118 bits (130), Expect = 2e-21 Identities = 185/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||| | |||||| || ||||| ||||| ||||||||||| | |||||| Sbjct 906 GTACATCTCGGAGTGGATATTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGGGCCTC 847 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 | | ||||| || || | ||| | | || |||||||| || || ||||| | Sbjct 846 AGAGACCTGGACCTCCTTCATGAAAC-GGCAGGCGAGATTCTCGAGAACGATGCCATCGG 788 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 | || || |||||||| ||||| || || | ||| |||||||||| | | ||||| | | Sbjct 787 AGGCGGCGAAGAAGGCGAGGACGTGCTTGATGAAGTGGCGCTCGTCGGGAGTGAGGGAGT 728 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 |||| | | || | | || || || || || | ||||||||| | || | Sbjct 727 CCCAGTGGCGAATATCCTGGGACAAATCGACCTCCTCGGCGGTCCAGAAGAAGGCCTCGG 668 Query 48663 CTTTTTTGTACATGCCCCATAT 48684 |||| |||||||| |||| || Sbjct 667 CTTTCTTGTACATCTCCCAGAT 646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922283983441920