Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq794097 131 3e-25 seq677466 129 1e-24 seq611863 100 5e-16 >seq794097 Length=14469 Score = 131 bits (144), Expect = 3e-25 Identities = 377/573 (66%), Gaps = 19/573 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||| |||||||||||||| || ||| |||||| ||||| || | ||| || Sbjct 12541 ATTTGGGAAATGTACAAGAAGGCCCAGGCCTCCTTCTGGACTGCCGACGAAGTCGATTTG 12482 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 ||| ||||| | | |||| || | || | |||| ||||||| ||||| || Sbjct 12481 GCCCAGGACCTCTCCCACTGGGACTCCCTCCTCCCCTCCGAGAAGCATTTCATCAAGCAC 12422 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || || || || || || || ||||||||| || | ||| Sbjct 12421 GTCCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCCTCGAGAATCTTGCCGCCCGCTTC 12362 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | | || || ||| | |||||| |||||||| |||||||| |||||||| Sbjct 12361 ATGAACGAGGTCCAGGTCTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATTGCCATCGAG 12302 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCC 25773 || | ||||| ||| |||| || ||| |||| ||| || || | || ||| Sbjct 12301 AACATCCACTCCGAGATGTA---CAGCCTTTTGATCGAGACCTATATCAAGGATTCTGCC 12245 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | ||| || | |||||| | ||| ||| || || ||| ||||| Sbjct 12244 GAGAAGGCCATGCTCTTCCGCGCCATCCACACCATTCCCTGCGTCCAGAACAAGGCCAAT 12185 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAG---CGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 |||||| || ||||| ||| | || | || |||||| ||| | ||| Sbjct 12184 TGGGCCCTGCGCTGGAT------TCAGGGTTCCGAATCCTTCACCGAGCGTCTGCTCGCC 12131 Query 25891 TTTG-CTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCTCA 25948 || | |||| |||||||| || || ||| ||| | | ||| || || |||||||| | Sbjct 12130 TTCGCCTGC-GTGGAGGGGATATTCTTCTCCGGAAGCTTCTGC-GCAATATTCTGGCTTA 12073 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || ||| ||||||||| || || |||||||| | || |||| |||| Sbjct 12072 AGAAGCGCGGGTTGATGCCCGGGTTGACGTTCTCCAACGAATTGATATCGCGGGATGAGG 12013 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 || | ||| | || || || |||||||| |||| Sbjct 12012 GTTTGCACTGCGACTTCGCGTGCCTGCTGTACA 11980 >seq677466 Length=8805 Score = 129 bits (142), Expect = 1e-24 Identities = 377/571 (66%), Gaps = 15/571 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || | ||| |||||||||||| ||| | ||| || Sbjct 8160 ATCTGGGAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGATTTG 8101 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 || |||| || | |||| || | || | ||||||| || || ||||| || Sbjct 8100 TCCCAGGATATTCGCCACTGGGACTCCCTCACTCCCGACGAGCGCCACTTCATCAAGCAC 8041 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || ||||| ||||| || || ||||||||| || | ||| Sbjct 8040 GTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTTCTCGAGAATCTCGCCGGCCGTTTC 7981 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | | ||| || ||| | |||||| |||||||| ||||| || |||||||| Sbjct 7980 ATGAAGGAGGTCCAGGTCTCTGAGGCCCGCGCCTTCTACGGCTTCCAAATCGCCATCGAG 7921 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GA--CGTACATTACAGACGTCGCC 25773 ||| | ||||| ||| |||| || || || | || | ||||| | || || Sbjct 7920 AATATCCACTCCGAGATGTA---CAGTCTCCTCCTCGAATCCTACATCAAGGATTCCGAA 7864 Query 25774 G-AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 | | |||| || || ||| | || || || | || || || | | ||||| Sbjct 7863 GAAAAGAGCTC-CCTTTTTCGCGCAATTGATACTGTCCCTTGCGTCCAACGCAAGGCCAA 7805 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||| | |||||| | || | || | |||| |||||| | | |||| Sbjct 7804 TTGGGCCCTCCGTTGGATCGATGGCTCTGA----ATCCTTTGCTGAGCGGATAATCGCCT 7749 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 ||||| ||||||||| || |||||| || | | ||| || || |||||||| ||| Sbjct 7748 TTGCTTGTGTGGAGGGGATTTTTTTCTCTGGAAGCTTCTGC-GCGATTTTCTGGCTGAAG 7690 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || ||||| || || ||||| ||||| | || |||||| ||||| Sbjct 7689 AAGCGTGGATTGATGCCTGGATTGACTTTTTCAAACGAATTGATTTCCAGGGATGAGGGC 7630 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||||| | || ||||| |||||||| |||| Sbjct 7629 CTCCACTGTGACTTTGCGTGCCTGCTTTACA 7599 >seq611863 Length=950 Score = 100 bits (110), Expect = 5e-16 Identities = 178/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || | || |||||||||||| ||| | ||| || Sbjct 646 ATCTGGGAGATGTACAAGAAAGCCGAGGCCTTCTTCTGGACCGCCGAGGAGGTCGATTTG 705 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 || |||| || | |||| || | || | ||||||| || || ||||| || Sbjct 706 TCCCAGGATATTCGCCACTGGGACTCCCTCACTCCCGACGAGCGCCACTTCATCAAGCAC 765 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || ||||| ||||| || || ||||||||| | | ||| Sbjct 766 GTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTTCTCGAGAATCTCGCCTGCCGTTTC 825 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | | ||| || ||| | |||||| |||||||| ||||| || |||||||| Sbjct 826 ATGAAGGAGGTCCAGGTCTCTGAGGCCCGCGCCTTCTACGGCTTCCAAATCGCCATCGAG 885 Query 25717 AATGTGCACTCTGAGGTGTA 25736 ||| | ||||| ||| |||| Sbjct 886 AATATCCACTCCGAGATGTA 905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919622671518720