Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq621678 104 2e-17 seq690132 89.7 4e-13 seq502676 89.7 4e-13 seq500796 87.8 2e-12 seq564810 86.0 5e-12 seq564812 82.4 6e-11 seq564809 82.4 6e-11 >seq621678 Length=9740 Score = 104 bits (114), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 |||| |||| || |||||||| ||| | || ||||| ||||| ||||||||||| Sbjct 684 AAGCCAAAATTCAG-GACAAAGAAGGAATTCCACCGGATCAGCAGAGGCTTATCTTTGCA 626 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 |||||||||||||||||| | ||| |||| ||||| ||||||||||| || || ||| Sbjct 625 GGCAAACAATTGGAAGATGGAAGGACTTTGGCGGATTACAACATTCAAAAGGAGTCCACT 566 Query 28752 CTGCACATGGTATTAAG 28768 |||| |||| |||| Sbjct 565 TTGCATTTGGTCCTAAG 549 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| |||||||| || || ||||||||||| || ||| || Sbjct 535 ATGCAGATATTTGTGAAAACATTGACTGGAAAAACCATTACTCTGGAGGTGGAGAGCTCT 476 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| ||||| | || ||||||||||| | || |||||| Sbjct 475 GACACTATTGATAATGTCAAAGCAAAGATTCAG-GACAAAGAGGGCATCCCACCAGATCA 417 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| || || ||||||||||| || | || ||| ||| | || ||||| || Sbjct 416 ACAGAGGCTGATATTTGCGGGCAAGCAGCTCGAGGATGGACGAACCCTTGCTGATTACAA 357 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 | ||||||| || || |||||||| |||| Sbjct 356 CGTTCAAAAGGAGTCCACTCTGCATTTGGT 327 >seq690132 Length=1697 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 28632 AAGCAAAAAATCGCCGACAAAGA-GGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGC 28690 |||| |||| || |||||||| |||| | | | | |||| ||||| || |||| ||| Sbjct 914 AAGCCAAAATTCAG-GACAAAGAAGGGATTCCACCGA-ATCAGCAGAGGCTCATCTGTGC 971 Query 28691 GGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTAC 28750 |||||||||||||||| | |||||| |||| ||||| | ||||||||| || || || Sbjct 972 AGGCAAACAATTGGAAGTTGAAAAAACTTTGGCGGATTACAGCATTCAAAAGGAGTCCAC 1031 Query 28751 TCTGCACATGGTATTAAG 28768 | |||| |||| |||| Sbjct 1032 TTTGCATTTGGTCCTAAG 1049 >seq502676 Length=6550 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || ||| | || || |||||||| || ||| ||| ||| Sbjct 1305 ATGCAGATATTTGTCAAGACACTGACTGGAAAAACCATCACTCTTGAAGTGGAGAGTTCT 1364 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| ||| || || ||||| || | || |||||| Sbjct 1365 GACACAATTGATAATGTCAAAGCAAAGATACAGGATAAAGAAGGTATCCCACCCGATCAA 1424 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||| ||||| ||||| || | || ||| ||| |||| ||||||||| Sbjct 1425 CAGAGGCTTATATTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTGGCTGATTATAAC 1484 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| || ||||||||||| |||| Sbjct 1485 ATCCAAAAGGAGTCTACTCTGCATCTGGT 1513 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/125 (75%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 |||| |||| || |||||||| || | || |||||| ||||| || || ||||| Sbjct 1156 AAGCCAAAATTCAA-GACAAAGAAGGCATTCCACCAGATCAGCAGAGGCTGATATTTGCA 1214 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 ||||||||||||||||| | ||| |||| ||||| ||| ||||||| || || ||| Sbjct 1215 GGCAAACAATTGGAAGACGGGAGGACTCTGGCAGATTACAACGTTCAAAAGGAGTCGACT 1274 Query 28752 CTGCA 28756 |||| Sbjct 1275 TTGCA 1279 >seq500796 Length=7474 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||| | || ||||||||||| || || || || Sbjct 1654 ATGCAGATTTTTGTAAAAACTCTTACCGGTAAAACCATCACTCTGGAGGTTGAGAGCTCC 1713 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| || || || || || || | || |||||| Sbjct 1714 GATACCATCGACAATGTCAAGGCTAAGATTCAAGATAAGGAAGGGATTCCTCCAGATCAG 1773 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||| ||||| || || ||| | |||||| || |||| | || ||||| || Sbjct 1774 CAGAGGCTTATTTTTGCTGGAAAGCAACTTGAAGATGGTAGAACTCTTGCAGATTACAAT 1833 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 ||||||||||||||||| || || Sbjct 1834 ATTCAAAAAGAATCTACCCTCCA 1856 >seq564810 Length=1937 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/133 (76%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 28638 AAAATCGCCGACAAAGA-GGGAGTGC-CCGTAGATCAACAGAGACTTATCTTTGCGGGCA 28695 ||||| | |||||||| |||| | | ||| ||||| ||||| || |||||||| |||| Sbjct 572 AAAATTGAGGACAAAGAAGGGATTCCACCG--GATCAGCAGAGGCTCATCTTTGCAGGCA 629 Query 28696 AACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGC 28755 || ||||||||| | | ||| |||| | ||| ||||||||||| || || ||| ||| Sbjct 630 AATAATTGGAAGTTGGAAGGACTTTGGCGGGTTACAACATTCAAAAGGAGTCCACTTTGC 689 Query 28756 ACATGGTATTAAG 28768 | |||| |||| Sbjct 690 ATTTGGTCCTAAG 702 >seq564812 Length=421 Score = 82.4 bits (90), Expect = 6e-11 Identities = 100/133 (75%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 28638 AAAATCGCCGACAAAGA-GGGAGTGC-CCGTAGATCAACAGAGACTTATCTTTGCGGGCA 28695 ||||| | |||||||| |||| | | ||| ||||| ||||| || |||||||| |||| Sbjct 123 AAAATTGAGGACAAAGAAGGGATTCCACCG--GATCAGCAGAGGCTCATCTTTGCAGGCA 180 Query 28696 AACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGC 28755 || ||||||||| | | ||| |||| ||| ||||||||||| || || ||| ||| Sbjct 181 AATAATTGGAAGTTGGAAGGACTTTGGCGTCTTACAACATTCAAAAGGAGTCCACTTTGC 240 Query 28756 ACATGGTATTAAG 28768 | |||| |||| Sbjct 241 ATTTGGTCCTAAG 253 >seq564809 Length=1567 Score = 82.4 bits (90), Expect = 6e-11 Identities = 100/133 (75%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 28638 AAAATCGCCGACAAAGA-GGGAGTGC-CCGTAGATCAACAGAGACTTATCTTTGCGGGCA 28695 ||||| | |||||||| |||| | | ||| ||||| ||||| || |||||||| |||| Sbjct 34 AAAATTGAGGACAAAGAAGGGATTCCACCG--GATCAGCAGAGGCTCATCTTTGCAGGCA 91 Query 28696 AACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGC 28755 || ||||||||| | | ||| |||| ||| ||||||||||| || || ||| ||| Sbjct 92 AATAATTGGAAGTTGGAAGGACTTTGGCGTCTTACAACATTCAAAAGGAGTCCACTTTGC 151 Query 28756 ACATGGTATTAAG 28768 | |||| |||| Sbjct 152 ATTTGGTCCTAAG 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421286717755152