Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq784841 441 2e-119 seq585748 399 6e-107 seq585752 306 1e-78 seq492030 262 1e-65 seq572160 102 2e-17 seq572830 95.1 4e-15 seq567144 95.1 4e-15 >seq784841 Length=3474 Score = 441 bits (488), Expect = 2e-119 Identities = 670/951 (70%), Gaps = 2/951 (0%) Strand=Plus/Plus Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536 || || |||||||| || || || || |||||||| || || | |||||||| ||||| Sbjct 2022 TCCAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCAGACCAAGGTTAGCACGA 2081 Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596 || | || |||||||| || || || || | || | | | | | | |||||||| Sbjct 2082 TTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGATTGGTAG 2141 Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656 || |||||||| || |||||||||||||| || | || | |||| ||||| ||| Sbjct 2142 AAATTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACCAGATA 2201 Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716 || || |||||||| ||||| | ||||| || | ||| || || ||||| |||| | Sbjct 2202 CCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAAAACTAGTA 2261 Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776 |||||||| || || || |||||||| || ||||| || |||||||| ||||| |||||| Sbjct 2262 TATTGGAATATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCC 2321 Query 21777 TCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGT 21836 ||||||||||| |||||||| | || || | | ||| || || || | || | Sbjct 2322 TCTTGACCAAATTTGTAACCTTCATTAGTAGATTCATTTTCTGTGGTTTCCCTGATCAAA 2381 Query 21837 GACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCC 21896 || || | || | ||| ||||||||| ||| | || || ||||| || || Sbjct 2382 CTAGAAGTTATCAAGGAACCATGCATAGCATTGAATAGGGAGCCGCCGAATACACCAGCT 2441 Query 21897 ACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATG 21956 || || | ||||||||| || |||||||| || ||||||||||| ||||| || | ||| Sbjct 2442 ACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATA 2501 Query 21957 TAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAAC 22016 ||||||| || || || || || | |||||| ||||||||||| || || |||| Sbjct 2502 AAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATT 2561 Query 22017 GGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATC 22076 || || | | ||| ||||| | ||||| || ||||||| | || |||| | ||| Sbjct 2562 GGGTAGATCAAGAAAACAGCGATAGCAGCTGCAACAGGAGTTAAATATGCAAAAGCAATC 2621 Query 22077 CAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACG 22136 || || | ||| || || || | |||| ||||||||| || ||||||||| | || Sbjct 2622 CAAGGTCGCATACCCAGACGGAAACTAATTTCCCACTCACGACCCATGTAACAAGCTACA 2681 Query 22137 CCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCA 22196 |||| | |||||| | || | |||| | ||||| | |||||| | ||| |||||| Sbjct 2682 CCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACAGTTGTATAACCACTCATCA 2741 Query 22197 AGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACG 22256 | | | |||||||| |||||||| || || | ||||| || | | |||| Sbjct 2742 ACGGATGTTGCTTCCCAGATTGGGTAAAAATGCAAACCGATAGCTGCAGAAGTAGGAATA 2801 Query 22257 ACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATT 22316 | ||| ||||| || || | ||| ||||| | || || |||| || ||||| || || Sbjct 2802 ATGGCACCTGAGATAATATCGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATA 2861 Query 22317 CCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-C 22375 ||||| || || || || || || ||| ||||| |||||||| || || |||| | Sbjct 2862 CCATCAATATCCACTGGAGGAGCAACAATGAAGGCAATAATAAATACAGAAGTTGCGGTC 2921 Query 22376 AAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 || ||| | || ||||| | || || | |||||| | ||||||||||| Sbjct 2922 AATAAGGTA-GGGATCATCAAAACACCAACCCATCCAATGTAAAGACGGTT 2971 >seq585748 Length=906 Score = 399 bits (442), Expect = 6e-107 Identities = 589/829 (71%), Gaps = 4/829 (0%) Strand=Plus/Plus Query 21600 TTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCT 21659 |||||||| || |||||||||||||| || | || | |||| ||| | ||||| Sbjct 2 TTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACTAGATACCC 61 Query 21660 ACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATAT 21719 || |||||||| ||||| || ||||| || | ||| || || || || |||||| || Sbjct 62 ACTACAGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCAAAT 121 Query 21720 TGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCT 21779 |||||||| || || |||||||| || ||||| || |||||||| ||||| ||||||||| Sbjct 122 TGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCCTCT 181 Query 21780 TGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGAC 21839 |||||||| |||||||| | || || | | ||| || || || | || | Sbjct 182 TGACCAAATTTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 241 Query 21840 GACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACA 21899 || | |||| | ||| ||||||| | ||| | || || ||||| || || || Sbjct 242 GAACTTACCAAGGAACCATGCATAGAACTGAATAGGGAGCCGCCGAATACACCAGCTACG 301 Query 21900 CCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAG 21959 || | ||||||||| || |||||||| || ||||||||||||||||| || | ||| || Sbjct 302 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAG 361 Query 21960 TTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGA 22019 ||||| || || || || || | |||||| ||||||||||| || || || | || Sbjct 362 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG 421 Query 22020 TAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAG 22079 || | | ||| |||||||| |||| || |||||||| || || |||||| ||||| Sbjct 422 TAGATCAAGAAAACAGCAGTAACAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAA 481 Query 22080 GGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCA 22139 || | ||| || || || | |||||||||||||| || ||||||||| | || ||| Sbjct 482 GGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCA 541 Query 22140 ATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGT 22199 | | || ||| | || | |||| | ||||| |||||||| | ||| ||||||| Sbjct 542 AGTAAGATGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCACTCATCAACG 601 Query 22200 GTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACG 22259 | || |||||||| |||||||| || || | |||| || | | |||| | | Sbjct 602 GATGCTGCTTCCCAGATTGGGTAAAAATGCAAATCGATTGCTGCAGAAGTAGGAATAATG 661 Query 22260 GCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCA 22319 || ||||| || || ||||| || || | || || |||| || ||||| || || ||| Sbjct 662 GCACCTGAGATAATATTGTTTCCGTAAAGTAGAGACCCAGAAACAGGTTCACGAATACCA 721 Query 22320 TCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA-ACAAGTTGTAGCGG-CAA 22377 || || || || || || || || || || |||||||| |||| || |||| ||| Sbjct 722 TCAATATCCACTGGAGGAGCAGTAATGAAAGCAATAATAAATACAA-AAGTTGCGGTCAA 780 Query 22378 GGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 ||| | || ||||| | || || |||||||| | ||||||||||| Sbjct 781 TAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 828 >seq585752 Length=1498 Score = 306 bits (338), Expect = 1e-78 Identities = 475/675 (70%), Gaps = 3/675 (0%) Strand=Plus/Plus Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536 || || |||||||| || || | |||||||| || || | |||||||| ||||| Sbjct 823 TCTAGAGGGAAGTTATGAGCATGAGTTTCATGCATAACTTCCATACCAAGGTTAGCACGA 882 Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596 || | || |||||| | || || || | | | || | | | | | ||||||||| Sbjct 883 TTGATGATATCAGCCTAAGTATTAATTAACGG-CCTTGGCTATCAACTATAGATTGGTTG 941 Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656 || |||||| | || ||||||||| |||| || | | || | | || ||| | | | Sbjct 942 AAATTGAAATCGTTTAAGTTGAAAACCATAGTTGTAATACCTAAAGTAGTGAACTAGACA 1001 Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716 |||| |||||||| | ||| || ||||| || | ||| || || || || |||| | Sbjct 1002 CCTAGTACAGGCCAAGAAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGTA 1061 Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776 ||||||||||| || ||||||||||| || ||||| || |||||||| ||||| |||||| Sbjct 1062 TATTGGAAGATCAGTCGACCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCC 1121 Query 21777 TCTTGACCAAACTTGTAACCAT-AGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835 ||||||||| | |||||||| | | | || || | | ||| || || || | ||| | Sbjct 1122 TCTTGACCACATTTGTAACCTTCACTAGTG-GATTCATTTTCTGTGGTTTCCCTAATCAA 1180 Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGC 21895 || || || | | ||| | ||||||| ||| || || || ||||| || || Sbjct 1181 ACTAGAAGTTACAAAGGAACCATTCATAGCATTGAATAAGGAGCCGCCGAATACACCAGC 1240 Query 21896 CACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCAT 21955 ||||| | ||||||||| || |||||||| || ||||||| ||||||||| || | ||| Sbjct 1241 TACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTTAGCCTGGAATACAATCAT 1300 Query 21956 GTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAA 22015 ||||||| || || || || || | |||||| ||||||||||| || || || | Sbjct 1301 AAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGAT 1360 Query 22016 CGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGAT 22075 | | || | | ||| ||| | || ||||| | || |||| || || ||||||| || Sbjct 1361 CTGGTAGATTAAGAAAACAACGGTAGCAGCTGTAGCAAGAGCTGAATATGCAACAACAAT 1420 Query 22076 CCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGAC 22135 ||| | | ||| || || | | |||||||||||||| | ||||||||| | || Sbjct 1421 CCAAGATCGCATACCCAGAAGGAAACTAAGTTCCCACTCATGACCCATGTAACAAGCTAC 1480 Query 22136 GCCAATGAGGAAGTG 22150 |||| | |||||| Sbjct 1481 ACCAAGTAAGAAGTG 1495 >seq492030 Length=881 Score = 262 bits (290), Expect = 1e-65 Identities = 340/470 (72%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 21532 CACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATT 21591 |||| || | || |||||||| || || || || | || | | | | | | ||||| Sbjct 881 CACGATTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGATT 822 Query 21592 GGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACC 21651 |||| || |||||||| || |||||||| ||||| || | || | |||| |||| Sbjct 821 GGTTGAAATTGAAACCGTTTAAGTTGAAGGCCATAGTGCTAATACCTAAAGCAGTGAACC 762 Query 21652 AAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGC 21711 | ||||| || |||||||| ||||| || ||||| || | ||| || || || || | Sbjct 761 AGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAAC 702 Query 21712 TAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCT 21771 |||||||||||||||| || || |||||||| || ||||| || |||||||| ||||| | Sbjct 701 TAGCATATTGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTT 642 Query 21772 CTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAA 21831 |||||||||||||||| |||||||| | || || | | ||| || || || | | Sbjct 641 CTTCCTCTTGACCAAATTTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGA 582 Query 21832 TGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGC 21891 | | || || |||| | | | ||||||||| ||| | || || ||||| | Sbjct 581 TCAAACTAGAAGTTACCAAGGAATCATGCATAGCACTGAATAGGGAGCCGCCGAATACAC 522 Query 21892 CGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCA 21951 | || || || | ||||||||| || |||||||| || ||||||||||||| ||| || | Sbjct 521 CAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAA 462 Query 21952 GCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 ||| ||||||| || || || || || | |||||| ||||||||||| Sbjct 461 TCATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 412 >seq572160 Length=4591 Score = 102 bits (112), Expect = 2e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| || | |||||||| || ||||| || |||||| | ||||| Sbjct 4430 CTAGCATATTGGAAGATCAGTTGGCCAAAATAACCATGAGCGGCTACAATACTATAAGTT 4371 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 ||||||||||||||||| |||||||| | || || | | ||| | || || | Sbjct 4370 TCTTCCTCTTGACCAAATTTGTAACCTTCATTAGCGGATTCATTTTCTATGGTTTCCCTG 4311 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| |||||| || ||| | || || ||||| Sbjct 4310 ATCAAACTAGAAGTTACCAAGGAACCATGCATAACACTGAATAGGGAGCCGCCGAATACA 4251 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATG 21919 || || || || | ||||||||| || || Sbjct 4250 CCAGCTACGCCTAACATGTGAAATGGGTG 4222 >seq572830 Length=4883 Score = 95.1 bits (104), Expect = 4e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 21720 TGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCT 21779 |||||||| || || |||||||| || ||||| || |||||||| ||||| ||||||||| Sbjct 641 TGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCCTCT 700 Query 21780 TGACCAAACTTGTAACC 21796 |||||||| |||||||| Sbjct 701 TGACCAAATTTGTAACC 717 >seq567144 Length=1974 Score = 95.1 bits (104), Expect = 4e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536 || || |||||||| || || || || |||||||| || || | |||||||| ||||| Sbjct 345 TCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGA 286 Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596 || | || |||||||| || | || || | || | | | | | | ||||||||| Sbjct 285 TTGATGATATCAGCCCAAGTACTAATTACACGGCCTTGACTATCAACTACAGATTGGTTG 226 Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGT 21628 || |||||||| || |||||||||||||| || Sbjct 225 AAATTGAAACCGTTTAAGTTGAAAGCCATAGT 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144828941288640