Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq445017 120 4e-22 seq677466 104 3e-17 seq551794 89.7 6e-13 seq794097 87.8 2e-12 seq651671 84.2 3e-11 seq615101 82.4 9e-11 >seq445017 Length=3110 Score = 120 bits (132), Expect = 4e-22 Identities = 283/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGG-TGCCAAGATCCC 175289 ||| | ||||| ||| | ||| |||||||||| | | || |||| ||| || || Sbjct 1875 GAGGTGGTGGAGTTTTTGAAGAAACCCGAGAGGT-TCACGGCTGTGGGTGCTCGTATTCC 1933 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 |||| ||||| | ||| || |||||||||||||| | || ||| || || Sbjct 1934 TAAGGGCGTTCTTCTTGTTGGTCCTCCTGGTACGGGAAAGACATTGCTAGCCAAGGCTAT 1993 Query 175350 CGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || || ||| | |||||||| || || | || | | | ||||| || |||| Sbjct 1994 AGCTGGGGAAGCCGGGGTCCCATTTTTCTCAATT-TCAGGTTCTGAGTTTGTTGAAATGT 2052 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| ||||| |||| || ||||| || | | ||| |||||| || Sbjct 2053 TTGTTGGTGTCGGTGCTTCGCGGGTCCGTGATCTTTTCAAGAAAGCCAAGGAAAATGCAC 2112 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGT---G 175525 |||| ||||| || ||||||| |||||||| || || ||| | | ||||| | Sbjct 2113 CATGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGACGACAAAGAGGGACTGGTATCG 2172 Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 || || |||||| |||||||| ||||| | || || || | || || ||||||| Sbjct 2173 GT---GGAGGAAATGATGAGAGAGAGCAAACTTTAAACCAGCTGTTGACAGAAATGGATG 2229 Query 175586 GCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTG 175645 | ||||| | ||||| ||| | || ||||| ||||| || || | ||||| || | Sbjct 2230 GTTTTGAAGGGAATACTGGTATTATTGTCATTGCAGCCACAAACCGTGCAGATATTCTCG 2289 Query 175646 A 175646 | Sbjct 2290 A 2290 >seq677466 Length=8805 Score = 104 bits (114), Expect = 3e-17 Identities = 305/460 (66%), Gaps = 20/460 (4%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 ||||| || ||||| | | || ||||| ||||||||||| || || ||||| || Sbjct 7773 TCCTTTGCTGAGCGGATAATCGCCTTTGCTTGTGTGGAGGGGATTTTTTTCTCTGGAAGC 7714 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| |||| ||| |||||||||| || | ||||| || | || ||||| Sbjct 7713 TTCTGCGCGATTTTCTGGCTGAAGAAGCGTGGATTGATGCCTGGATTGACTTTTTCAAAC 7654 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG-GAGCTCTTCAAGAC 65246 ||| | |||||| | |||||||| |||||| || |||| |||| ||| || || | Sbjct 7653 GAATTGATTTCCAGGGATGAGGGCCTCCACTGTGACTTTG-CGTGCCTGCT-TTACAGCC 7596 Query 65247 TTTGCGTAATA-------GACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGG 65299 ||| || | || | | | |||| | | | ||| ||| || || | Sbjct 7595 --TGCTGAAGATGAAGCTGAGCGAGGA--GAAA--GTGAAGGGCATAGTGGCGGATGCTG 7542 Query 65300 TTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACT 65359 ||||||| |||| | || | | || || || || ||| | | || ||||| Sbjct 7541 TTGAGATCGAGAGGGAATTTGTGTGCGATGCGCTGCCGTGTGCGTTGGTGGGGATGAATG 7482 Query 65360 CTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGG 65419 ||| |||| | |||||||||| | |||| ||||||| | || || ||||||| Sbjct 7481 GTGAATTGATGAGCCAGTACATTGAATTTGTGGCGGATCGATTGCT-GAATGCGTTGGGG 7423 Query 65420 --TGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGA 65477 || | || | || | | |||| |||||||| | ||||| || ||||| | Sbjct 7422 TATGGGA-AGATGTACAATGTGCAGAACCCATTTGATTGGATGGAGTTGATCAGCCTGCA 7364 Query 65478 TGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTAT 65517 |||||||| || ||||||||||| || || ||||| ||| Sbjct 7363 GGGGAAGACGAATTTCTTTGAGAAACGGGTGGGGGAGTAT 7324 >seq551794 Length=11183 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTC 75190 |||| ||| | || ||||||||| | ||||||||||| | | ||||| | | | | Sbjct 4901 GACTTTGACTATGACTACTTTGGTTTTAAAACCCTTGAAAGGTCTTATCTCCTAAAGATT 4842 Query 75191 GATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCAC 75250 |||| | | | |||| || ||| ||||||| ||| | || || | ||| ||||| Sbjct 4841 AATGGGAAAGTTGTTGAAAGGCCTCAGCACATGTTGATGAGAGTTGCTGTTGGCGTCCAC 4782 Query 75251 GGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT 75310 ||| ||||||||||| || | | ||||| | ||||||| | ||| | | Sbjct 4781 AAGGATGACATTGATTCAGTAATACAAACATATCATCTATTGTCCCAGCGATGGTTTACT 4722 Query 75311 CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| | || || || ||||||||||| |||||||| || || Sbjct 4721 CATGCATCTCCCACGCTTTTCAATGCTGGGACACCAAGGCCCCA 4678 >seq794097 Length=14469 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||||| || | || || | |||| ||||| || ||||| || ||| || Sbjct 12223 GCCATCCACACCATTCCCTGCGTCCAGAACAAGGCCAATTGGGCCCTGCGCTGGATT--- 12167 Query 65056 ACAAAGTCTCGC-TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 || || || |||||| ||||||| || | || || || || |||||||| || || Sbjct 12166 -CAGGGTTCCGAATCCTTCACCGAGCGTCTGCTCGCCTTCGCCTGCGTGGAGGGGATATT 12108 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 ||||||||| |||||||| || | ||| | |||||||| || | ||||| || | Sbjct 12107 CTTCTCCGGAAGCTTCTGCGCAATATTCTGGCTTAAGAAGCGCGGGTTGATGCCCGGGTT 12048 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| || ||| | || || || ||||||||| | ||| Sbjct 12047 GACGTTCTCCAACGAATTGATATCGCGGGATGAGGGTTTGCAC 12005 >seq651671 Length=10698 Score = 84.2 bits (92), Expect = 3e-11 Identities = 260/398 (65%), Gaps = 12/398 (3%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||| || ||||| |||| || | | ||| ||| || ||||| ||||| || Sbjct 6701 GGTGCGAAAATCCCGAAAGGCTGTCTATTGGTCGGTCCGCCTGGCACGGGGAAGACTCTT 6760 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || | || | || || ||| || || |||||| | || | || || | Sbjct 6761 CTGGCGAGGGCGGTGGCCGGGGAAGCAGGGGTGCCATTCTTTTCTTGTGCAGCTTCAGAG 6820 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||| ||||||| || || || || ||| || | ||| | || || | ||| Sbjct 6821 TTTGTAGAGCTGTTTGTGGGCGTTGGGGCTTCAAGAGTGAGGGATTTGTTCGATAAGGCC 6880 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || |||||||| || ||||||||||| || ||||| || || | ||| | Sbjct 6881 AAGGCTAAAGCTCCATGTATAGTGTTCATTGATGAAATAGATGCTGTCGGGAGGCAGAGA 6940 Query 175516 AGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | || || |||| || | || || ||||| || ||||| || ||||| ||| | Sbjct 6941 GGGGCGGGGCTTGGT-GGC--GGGAACGATGAGAGGGAGCAAACCATCAATCAGCTATTG 6997 Query 175573 ACCGAGATGGATGGCTTT---GACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 || || |||||||| ||| | ||| ||||| || | ||| | | ||| || ||| Sbjct 6998 ACGGAAATGGATGGATTTTTGGGGAAT---TCTGGCGTTATAGTTTTGGGGGCGACGAAT 7054 Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGG 175667 | |||| ||||||||| || || || | ||||| Sbjct 7055 AGACCGGATGTCCTTGATGCAGCACTGCTGAGGCCGGG 7092 >seq615101 Length=1483 Score = 82.4 bits (90), Expect = 9e-11 Identities = 186/277 (67%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| ||||||||||| | || | || | || ||||| || || || ||| Sbjct 782 CCGGGTACCGGAAAGACCCTTTTGGCAAGGGCGGTGGCCGGTGAGGCAGGCGTGCCGTTC 841 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | || | | ||||| ||| ||||||| ||||| || || ||| || Sbjct 842 TTCTCGTGTGCAGCATCCGAGTTTGTAGAGCTGTTTGTGGGTGTTGGAGCTTCAAGAGTG 901 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | ||| | ||||| | ||| || || || ||||| ||||||||||| ||| Sbjct 902 AGGGATTTGTTTGAGAAAGCCAAGTCGAAGGCGCCTTGCATTGTTTTCATTGATGAAATT 961 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGC-CAGCAAATGACGAGAGAGAACA 175553 ||||| ||||| | ||| | | || || | | || | ||||| ||| |||| || Sbjct 962 GATGCTGTGGGGAGGCAGAGAGGGGCAGG-GCTCGGCGGTGGGAATGATGAGCGAGAGCA 1020 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| ||||| || || | || || |||||||| ||| Sbjct 1021 AACTATTAACCAGCTCTTGACTGAAATGGATGGTTTT 1057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590646499069440