Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq784841 480 1e-130 seq585748 405 6e-108 seq585752 295 8e-75 seq492030 289 3e-73 seq572160 123 3e-23 seq572830 105 8e-18 seq567144 104 3e-17 >seq784841 Length=3474 Score = 480 bits (532), Expect = 1e-130 Identities = 691/974 (71%), Gaps = 0/974 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 ||||| || | |||||||| || ||||| | ||||||||||||||||| ||| | ||| Sbjct 2016 GCTAAATCCAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCAGACCAAGGTTA 2075 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | || | | ||| |||| ||| ||| | || | | |||||| || ||| Sbjct 2076 GCACGATTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGAT 2135 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 |||| || || || ||||| | ||| || ||||| |||| |||||| | || ||| ||| Sbjct 2136 TGGTAGAAATTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 2195 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130 || | || || || || | | ||| | ||||||||| | | | ||||||||| Sbjct 2196 CAGATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAAAA 2255 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 | ||| ||||| || | || ||||| || |||||||| || ||||||||||| || Sbjct 2256 CTAGTATATTGGAATATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTT 2315 Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250 ||||| ||||||||||| || ||||| | || ||| || | ||| || || || ||| Sbjct 2316 TCTTCCTCTTGACCAAATTTGTAACCTTCATTAGTAGATTCATTTTCTGTGGTTTCCCTG 2375 Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310 || | | ||| || | || ||||| ||||||||| |||| || || || ||||| | | Sbjct 2376 ATCAAACTAGAAGTTATCAAGGAACCATGCATAGCATTGAATAGGGAGCCGCCGAATACA 2435 Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370 || ||||| ||| ||| || || || |||||||| ||||| ||||| ||||||||||| Sbjct 2436 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACA 2495 Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430 | ||| ||||| || ||||||||||| ||||||||||| |||||||| || || ||| Sbjct 2496 ATCATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 2555 Query 8431 CCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACA 8490 |||| ||| || | ||||| || |||| |||||| | || |||| |||||| | | Sbjct 2556 CCAATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCAACAGGAGTTAAATATGCAAAA 2615 Query 8491 CAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCA 8550 ||||| |||| |||||| | ||| | | ||||||| | |||||||||| | Sbjct 2616 GCAATCCAAGGTCGCATACCCAGACGGAAACTAATTTCCCACTCACGACCCATGTAACAA 2675 Query 8551 GAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCAC 8610 | | |||| | |||||| | | || | | ||| ||||| | ||| || |||||| Sbjct 2676 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACAGTTGTATAACCAC 2735 Query 8611 TCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGAT 8670 ||||| | | | |||||||| || || || || || || || ||||| |||| Sbjct 2736 TCATCAACGGATGTTGCTTCCCAGATTGGGTAAAAATGCAAACCGATAGCTGCAGAAGTA 2795 Query 8671 GGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCA 8730 |||| | ||||| ||||| || | ||||||||| | | || || | |||||||||| Sbjct 2796 GGAATAATGGCACCTGAGATAATATCGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCA 2855 Query 8731 CGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCA 8790 |||||||| || ||||| || || |||||| |||| || || | ||||| || || Sbjct 2856 CGAATACCATCAATATCCACTGGAGGAGCAACAATGAAGGCAATAATAAATACAGAAGTT 2915 Query 8791 GCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTT 8850 || | || ||| ||| ||||| | ||| |||| ||| || | ||||| | ||| | Sbjct 2916 GCGGTCAATAAGGTAGGGATCATCAAAACACCAACCCATCCAATGTAAAGACGGTTTTCG 2975 Query 8851 GTACTTGTAACCCA 8864 || || || | ||| Sbjct 2976 GTGCTGGTTATCCA 2989 >seq585748 Length=906 Score = 405 bits (448), Expect = 6e-108 Identities = 588/828 (71%), Gaps = 2/828 (0%) Strand=Plus/Plus Query 8020 TTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACAT 8079 || || ||||| | ||| || ||||| |||| |||||| | || ||| ||| | | || Sbjct 2 TTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACTAGATACCC 61 Query 8080 ACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGCATA 8138 || || || | | ||| ||||||||||| | | | |||||| |||| | ||| | Sbjct 62 ACTACAGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTA-GCAAA 120 Query 8139 CTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTC 8198 |||||||| | || ||||| || |||||||| || ||||||||||| || ||||| || Sbjct 121 TTGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCCTC 180 Query 8199 TTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGA 8258 ||||||||| || ||||| | || || || | ||| || || || ||||| | | Sbjct 181 TTGACCAAATTTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACT 240 Query 8259 AGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTAC 8318 ||| | || || ||||| ||||||| |||||| || || || ||||| | ||| ||||| Sbjct 241 AGAACTTACCAAGGAACCATGCATAGAACTGAATAGGGAGCCGCCGAATACACCAGCTAC 300 Query 8319 CCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAA 8378 ||| ||| || || || |||||||| ||||| ||||| || |||||||| | ||| || Sbjct 301 GCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAA 360 Query 8379 GTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGG 8438 ||| || ||||||||||| ||||||||||| |||||||| || || ||||| | ||| Sbjct 361 GTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGG 420 Query 8439 ATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCA 8498 || | ||||| || || | |||| | || ||||| |||||| ||| ||||| Sbjct 421 GTAGATCAAGAAAACAGCAGTAACAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCA 480 Query 8499 TGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCC 8558 |||| |||||| | ||| | | ||||||| | |||||||||| || | || Sbjct 481 AGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC 540 Query 8559 AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAA 8618 || | || ||| | | || | | ||| ||||| ||||| || ||||||||||| | Sbjct 541 AAGTAAGATGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCACTCATCAAC 600 Query 8619 TGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGAC 8678 | || |||||||| || || || || || || | || || |||| |||| | Sbjct 601 GGATGCTGCTTCCCAGATTGGGTAAAAATGCAAATCGATTGCTGCAGAAGTAGGAATAAT 660 Query 8679 AGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACC 8738 ||||| ||||| || |||||||| || | | || || | |||||||||||||||||| Sbjct 661 GGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGACCCAGAAACAGGTTCACGAATACC 720 Query 8739 GTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAA 8798 || ||||| || || ||||||| ||| || || | ||||| | || || | || Sbjct 721 ATCAATATCCACTGGAGGAGCAGTAATGAAAGCAATAATAAATACAAAAGTTGCGGTCAA 780 Query 8799 CAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTT 8846 ||| ||| ||||| | ||| |||||||| || | ||||| | ||| Sbjct 781 TAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 828 >seq585752 Length=1498 Score = 295 bits (326), Expect = 8e-75 Identities = 445/625 (71%), Gaps = 11/625 (2%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 ||||| |||| |||||||| || |||| |||||||||||||||||||||| | ||| Sbjct 817 GCTAAATCTAGAGGGAAGTTATGAGCATGAGTTTCATGCATAACTTCCATACCAAGGTTA 876 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTAC--CATTAAC-ATCAACAACT 8007 || | || | | ||| || | ||| ||| | || | || | |||||| | Sbjct 877 GCACGATTGATGATATCAGCCTAAGTATTAATTA----ACGGCCTTGGCTATCAACTATA 932 Query 8008 GATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTT 8067 |||||||| || || || |||| | ||| || |||| || |||||| | || ||| Sbjct 933 GATTGGTTGAAATTGAAATCGTTTAAGTTGAAAACCATAGTTGTAATACCTAAAGTAGTG 992 Query 8068 AACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT- 8126 ||| | |||| || || || | | ||| ||||||||||| | | | |||||| Sbjct 993 AACTAGACACCTAGTACAGGCCAAGAAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTG 1052 Query 8127 AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATA 8186 |||| | | ||| |||||||| | || |||||| || |||||||| || ||||||||||| Sbjct 1053 AAACTA-GTATATTGGAAGATCAGTCGACCAAAATAACCATGAGCGGCTACAATATTATA 1111 Query 8187 GGTCTCTTCTTCTTGACCAAACTTATAACCAT-AGTTCTGAGACTCTTCTTCAGTTGTCT 8245 || ||||| ||||||||| | || ||||| | | | || || || | ||| || || | Sbjct 1112 AGTTTCTTCCTCTTGACCACATTTGTAACCTTCACTAGTG-GATTCATTTTCTGTGGTTT 1170 Query 8246 CTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGA 8305 | || || | | ||| || || || ||||| | ||||||| |||| | || || |||| Sbjct 1171 CCCTAATCAAACTAGAAGTTACAAAGGAACCATTCATAGCATTGAATAAGGAGCCGCCGA 1230 Query 8306 ACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGA 8365 | | ||| ||||| ||| ||| || || || |||||||| ||||| |||| || |||| Sbjct 1231 ATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTTAGCCTGGA 1290 Query 8366 ATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAAC 8425 |||| | ||| ||||| || ||||||||||| ||||||||||| |||||||| || | Sbjct 1291 ATACAATCATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTC 1350 Query 8426 CCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATG 8485 | ||||| | | || | |||||| || || |||||| | | |||| ||||| Sbjct 1351 CTTGACCGATCTGGTAGATTAAGAAAACAACGGTAGCAGCTGTAGCAAGAGCTGAATATG 1410 Query 8486 CTACACAGATCCATGGTCTCATACC 8510 | ||| ||||| | || |||||| Sbjct 1411 CAACAACAATCCAAGATCGCATACC 1435 >seq492030 Length=881 Score = 289 bits (320), Expect = 3e-73 Identities = 331/442 (75%), Gaps = 2/442 (0%) Strand=Plus/Minus Query 7998 ATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACC 8057 |||||| || |||||||| || || || ||||| | ||| || ||||| |||| |||||| Sbjct 835 ATCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTTGAAGGCCATAGTGCTAATACC 776 Query 8058 CATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCT 8117 | || ||| ||||| | || || || || | | ||| ||||||||||| | | Sbjct 775 TAAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAATGAACG 716 Query 8118 ACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAA 8176 | |||||| |||| | ||||| |||||||| | || ||||| || |||||||| || | Sbjct 715 AGAGTTGTTGAAACTA-GCATATTGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTA 657 Query 8177 CAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTT 8236 |||||||||| || ||||| ||||||||||| || ||||| | || || || | || Sbjct 656 CAATATTATAAGTTTCTTCCTCTTGACCAAATTTGTAACCTTCATTAGCGGATTCATTTT 597 Query 8237 CAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTG 8296 | || || || ||||| | | ||| || || || ||| | |||||||||||||| || | Sbjct 596 CTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAATCATGCATAGCACTGAATAGGG 537 Query 8297 ATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCT 8356 | || ||||| | ||| ||||| ||| ||| || || || |||||||| ||||| |||| Sbjct 536 AGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCT 477 Query 8357 CTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAG 8416 | || | |||||| | ||| ||||| || ||||||||||| ||||||||||| ||||||| Sbjct 476 CAGCCTAGAATACAATCATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAG 417 Query 8417 AGAATGAACCCTGACCAAATGG 8438 | || || ||||| | ||| Sbjct 416 AAAAACTTCCTTGACCGATTGG 395 >seq572160 Length=4591 Score = 123 bits (136), Expect = 3e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 8134 GCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCT 8193 ||||| |||||||| | | ||||| || |||||||| || |||||| |||| || ||| Sbjct 4427 GCATATTGGAAGATCAGTTGGCCAAAATAACCATGAGCGGCTACAATACTATAAGTTTCT 4368 Query 8194 TCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATT 8253 || ||||||||||| || ||||| | || || || | ||| | || || ||||| Sbjct 4367 TCCTCTTGACCAAATTTGTAACCTTCATTAGCGGATTCATTTTCTATGGTTTCCCTGATC 4308 Query 8254 AGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCT 8313 | | ||| || || || ||||| |||||| ||||||| || || || ||||| | ||| Sbjct 4307 AAACTAGAAGTTACCAAGGAACCATGCATAACACTGAATAGGGAGCCGCCGAATACACCA 4248 Query 8314 GCTACCCCTGCCATATGGAAAGGATG 8339 ||||| ||| ||| || || || || Sbjct 4247 GCTACGCCTAACATGTGAAATGGGTG 4222 >seq572830 Length=4883 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 8140 TGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCT 8199 |||||||| | || ||||| || |||||||| || ||||||||||| || ||||| ||| Sbjct 641 TGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCCTCT 700 Query 8200 TGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAA 8259 |||||||| || ||||| | || || || | ||| || || || ||||| | | | Sbjct 701 TGACCAAATTTGTAACCTTCATTAGTGGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 760 Query 8260 GATGTAACTAAAGAACCGTGCATAGCACTGA 8290 || | || || ||||| ||||||||||||| Sbjct 761 GAAGGTACCAAGGAACCATGCATAGCACTGA 791 >seq567144 Length=1974 Score = 104 bits (114), Expect = 3e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 ||||| |||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 351 GCTAAATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 292 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | || | | ||| |||| ||| ||| | || | | |||||| || ||| Sbjct 291 GCACGATTGATGATATCAGCCCAAGTACTAATTACACGGCCTTGACTATCAACTACAGAT 232 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAG 8065 ||||| || || || ||||| | ||| || ||||| |||| |||||| | || || Sbjct 231 TGGTTGAAATTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAG 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609747748575360