Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq784841 441 2e-119 seq585748 399 6e-107 seq585752 306 1e-78 seq492030 262 1e-65 seq572160 102 2e-17 seq572830 95.1 4e-15 seq567144 95.1 4e-15 >seq784841 Length=3474 Score = 441 bits (488), Expect = 2e-119 Identities = 670/951 (70%), Gaps = 2/951 (0%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||| | || || | ||||| || | ||| ||| |||| || Sbjct 2971 AACCGTCTTTACATTGGATGGGTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 2913 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||| ||||| ||| || || || || || || ||||| || || || Sbjct 2912 TTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 2853 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 ||| || |||| || || | ||||| ||| | || || ||||| ||| | |||| | Sbjct 2852 ACCTGTTTCTGGGTCTCTACTTTATGGAAACGATATTATCTCAGGTGCCATTATTCCTAC 2793 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || ||||| | || || |||||||| |||||||| | | ||||||| || Sbjct 2792 TTCTGCAGCTATCGGTTTGCATTTTTACCCAATCTGGGAAGCAACATCCGTTGATGAGTG 2733 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 | | |||||| | ||||| | |||| | || | |||||| | |||| || | Sbjct 2732 GTTATACAACTGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 2673 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||||||||| || ||||||||| |||| | || || || ||| | || ||||| | | Sbjct 2672 TTACATGGGTCGTGAGTGGGAAATTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTTT 2613 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || | ||||||| || ||||| | ||||| ||| | | || || |||| || Sbjct 2612 TGCATATTTAACTCCTGTTGCAGCTGCTATCGCTGTTTTCTTGATCTACCCAATTGGTCA 2553 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || ||||||||||| |||||| | || || || || || ||||||| ||| | || Sbjct 2552 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATGATTGT 2493 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 ||||| ||||||||||| || |||||||| || ||||||||| | || || || || || Sbjct 2492 ATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 2433 Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859 ||| || || | ||| ||||||||| ||| | || | || || | || | Sbjct 2432 ATTCGGCGGCTCCCTATTCAATGCTATGCATGGTTCCTTGATAACTTCTAGTTTGATCAG 2373 Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919 || || || ||| | | || || | |||||||| ||||||||||||||||| || Sbjct 2372 GGAAACCACAGAAAATGAATCTACTAATGAAGGTTACAAATTTGGTCAAGAGGAAGAAAC 2313 Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979 ||| |||||||| || ||||| || |||||||| || || || ||||||||| |||| || Sbjct 2312 TTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATATTCCAATATACTAGTTT 2253 Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039 ||| || || ||| | || ||||| | ||||| |||||||| || ||||| ||||| Sbjct 2252 TAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGGTATCTGGTT 2193 Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099 |||| | || | || |||||||||||||| || |||||||| || ||||||| Sbjct 2192 CACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAATTTCTACCAATC 2133 Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159 | | | | | | | || | || || || || |||||||| || | || ||||| || Sbjct 2132 TGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAATCGTGCTAA 2073 Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGA 42210 |||||| | || || |||||||| || || || || |||||||| || || Sbjct 2072 CCTTGGTCTGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTGGA 2022 >seq585748 Length=906 Score = 399 bits (442), Expect = 6e-107 Identities = 589/829 (71%), Gaps = 4/829 (0%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | ||||| || | ||| ||| |||| || Sbjct 828 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 770 Query 41320 AACTTGT-TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAG 41378 |||| |||||||| || || || || || || || || || ||||| || || | Sbjct 769 TT-TTGTATTTATTATTGCTTTCATTACTGCTCCTCCAGTGGATATTGATGGTATTCGTG 711 Query 41379 AACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGA 41438 |||| || |||| || || | || || ||||| || || ||||| ||| | |||| | Sbjct 710 AACCTGTTTCTGGGTCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTA 651 Query 41439 GCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAAT 41498 | || |||| | || || |||||||| |||||||| || | ||||||| | Sbjct 650 CTTCTGCAGCAATCGATTTGCATTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAGT 591 Query 41499 GGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTG 41558 || | |||||||| ||||| | |||| | || | ||| || | |||| || | Sbjct 590 GGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACATCTTACTTGGTGTAGCTT 531 Query 41559 CTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTG 41618 ||||||||| || |||||||||||||| | || || || ||| | || ||||| || Sbjct 530 GTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTG 471 Query 41619 TTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGAC 41678 |||| || || |||||||| || |||| |||||||| ||| | | || || | || | Sbjct 470 TTGCATATTCAGCTCCTGTTGCAGCTGTTACTGCTGTTTTCTTGATCTACCCAATCGGTC 411 Query 41679 AGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGG 41738 | || ||||||||||| |||||| | || || || || || ||||||| ||| | | Sbjct 410 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATGATTG 351 Query 41739 TGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCG 41798 | ||||||||||||||||| || |||||||| || ||||||||| | || || || || | Sbjct 350 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTG 291 Query 41799 TATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTC 41858 |||| || || | ||| | ||||||| ||| | |||| | || | || Sbjct 290 TATTCGGCGGCTCCCTATTCAGTTCTATGCATGGTTCCTTGGTAAGTTCTAGTTTGATCA 231 Query 41859 GTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGA 41918 | || || || ||| | | || || | |||||||| ||||||||||||||||| | Sbjct 230 GGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGGAAGAAA 171 Query 41919 CTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCT 41978 |||| |||||||| || ||||| || |||||||| || || |||||||||| |||||| | Sbjct 170 CTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCAATTTGCTAGTT 111 Query 41979 TTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGT 42038 | || || || ||| | || ||||| || ||||| |||||||| || ||||| | || Sbjct 110 TCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTAGT 51 Query 42039 TTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAA 42087 | |||| | || | || |||||||||||||| || |||||||| Sbjct 50 TCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAA 2 >seq585752 Length=1498 Score = 306 bits (338), Expect = 1e-78 Identities = 475/675 (70%), Gaps = 3/675 (0%) Strand=Plus/Minus Query 41537 CACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 41596 |||||| | |||| || | ||||||||| | |||||||||||||| | | || Sbjct 1495 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCATGAGTGGGAACTTAGTTTCCTTCTG 1436 Query 41597 GGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTG 41656 || ||| | | ||||| ||||||| || || |||| || | ||||| || | ||| Sbjct 1435 GGTATGCGATCTTGGATTGTTGTTGCATATTCAGCTCTTGCTACAGCTGCTACCGTTGTT 1376 Query 41657 TTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCC 41716 ||| | | || | | | || || || ||||||||||| |||||| | || || || Sbjct 1375 TTCTTAATCTACCAGATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCT 1316 Query 41717 GGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTT 41776 || || ||||||| ||| | || ||||||||| ||||||| || |||||||| || ||| Sbjct 1315 GGTACTTTCAACTTTATGATTGTATTCCAGGCTAAGCACAACATCCTTATGCACCCATTT 1256 Query 41777 CACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGC 41836 |||||| | ||||| || || ||||| || || || ||| ||||||| | ||| | Sbjct 1255 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTCAATGCTATGAATGGTTCC 1196 Query 41837 CTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACT-ATGGTTA 41895 | || || || | ||| | || || || ||| | | || || | | | ||||| Sbjct 1195 TTTGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATC-CACTAGTGAAGGTTA 1137 Query 41896 CAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCG 41955 ||| | ||||||||||||||| ||||| |||||||| || ||||| || ||||||||||| Sbjct 1136 CAAATGTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGTCG 1077 Query 41956 GCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGC 42015 || |||||||||||| |||| || || || || ||| | || ||||| || ||| | Sbjct 1076 ACTGATCTTCCAATATACTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTTC 1017 Query 42016 CTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTT 42075 |||||||| ||||| | | ||| || | | || | | || |||| ||||||||| Sbjct 1016 TTGGCCTGTACTAGGTGTCTAGTTCACTACTTTAGGTATTACAACTATGGTTTTCAACTT 957 Query 42076 GAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTG 42135 || | |||||| || ||||||||| | | | | | || | | | || || || | Sbjct 956 AAACGATTTCAATTTCAACCAATCTATAGTTGATAGCCAAGG-CCGTTAATTAATACTTA 898 Query 42136 GGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACA 42195 |||||| || | || ||||| |||||||| | || || |||||||| | || || Sbjct 897 GGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAAACTCATGCTCA 838 Query 42196 CAACTTCCCGCTTGA 42210 |||||||| || || Sbjct 837 TAACTTCCCTCTAGA 823 >seq492030 Length=881 Score = 262 bits (290), Expect = 1e-65 Identities = 340/470 (72%), Gaps = 0/470 (0%) Strand=Plus/Plus Query 41686 TTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCA 41745 ||||||||||| |||||| | || || || || || ||||||| ||| | || ||| | Sbjct 412 TTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATGATTGTATTCTA 471 Query 41746 GGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGG 41805 |||||||||||| || |||||||| || ||||||||| | || || || || ||||| || Sbjct 472 GGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGG 531 Query 41806 TGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGAC 41865 || | ||| ||||||||| | | | |||| || || | || | || || Sbjct 532 CGGCTCCCTATTCAGTGCTATGCATGATTCCTTGGTAACTTCTAGTTTGATCAGGGAAAC 591 Query 41866 GACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAA 41925 || ||| | | || || | |||||||| ||||||||||||||||| ||||| || Sbjct 592 CACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAA 651 Query 41926 TATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAA 41985 |||||| || ||||| || |||||||| || || ||||||||||||||||| || || || Sbjct 652 TATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCAATATGCTAGTTTCAACAA 711 Query 41986 TTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGC 42045 || ||| | || ||||| || ||||| |||||||| || ||||| ||||| |||| Sbjct 712 CTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGC 771 Query 42046 GCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCT 42105 | || | || ||||| |||||||| || |||||||| || ||||||||| | | Sbjct 772 TTTAGGTATTAGCACTATGGCCTTCAACTTAAACGGTTTCAATTTCAACCAATCTGTAGT 831 Query 42106 AGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTG 42155 | | | | || | || || || || |||||||| || | || |||| Sbjct 832 TGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAATCGTG 881 >seq572160 Length=4591 Score = 102 bits (112), Expect = 2e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41768 CATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATG 41827 || || ||||||||| | || || || || ||||| || || | ||| || |||| Sbjct 4222 CACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGTTATG 4281 Query 41828 CACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAAC 41887 || ||| | |||| || || | || | || || | ||| | | || || Sbjct 4282 CATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCCGCTAAT 4341 Query 41888 TATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTAT 41947 | |||||||| ||||||||||||||||| ||||| | |||||| || ||||| || ||| Sbjct 4342 GAAGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAGTATTGTAGCCGCTCATGGTTAT 4401 Query 41948 TTTGGTCGGCTTATCTTCCAATATGCTAG 41976 ||||| | || ||||||||||||||||| Sbjct 4402 TTTGGCCAACTGATCTTCCAATATGCTAG 4430 >seq572830 Length=4883 Score = 95.1 bits (104), Expect = 4e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 |||||||| ||||||||||||||||| ||||| |||||||| || ||||| || |||||| Sbjct 717 GGTTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTT 658 Query 41951 GGTCGGCTTATCTTCCA 41967 || || || |||||||| Sbjct 657 GGCCGACTGATCTTCCA 641 >seq567144 Length=1974 Score = 95.1 bits (104), Expect = 4e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 42059 ACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGA 42118 || |||||||||||||| || |||||||| || ||||||||| | | | | | | || Sbjct 194 ACTATGGCTTTCAACTTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGC 253 Query 42119 CAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATG 42178 | || || | || |||||||| || | || ||||| |||||||| | || || ||| Sbjct 254 CGTGTAATTAGTACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTTATG 313 Query 42179 CATGAGCGGAACGCACACAACTTCCCGCTTGA 42210 ||||| || || || || |||||||| || || Sbjct 314 CATGAACGTAATGCTCATAACTTCCCTCTAGA 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144835280922752