Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq784841 446 5e-121 seq585748 372 9e-99 seq585752 259 1e-64 seq492030 244 3e-60 seq567144 113 1e-20 seq126251 86.0 2e-12 >seq784841 Length=3474 Score = 446 bits (494), Expect = 5e-121 Identities = 691/984 (70%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 ||||| || || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 2016 GCTAAATCCAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCAGACCAAGGTTA 2075 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || || || | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 2076 GCACGATTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGAT 2135 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 |||| || || ||||| |||| ||| || ||||| |||| ||||| | || || | | Sbjct 2136 TGGTAGAAATTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 2195 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | ||||| || | ||||| ||| |||||| Sbjct 2196 CAGATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAAAA 2255 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || | ||| || || || | || ||||| || || || || || ||||||||||| || Sbjct 2256 CTAGTATATTGGAATATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTT 2315 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| ||||| || || || | ||| || | | ||||| ||||| Sbjct 2316 TCTTCCTCTTGACCAAATTTGTAACCTTCATTAGTAGATTCATTTTCTGTGGTTTCCCTG 2375 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| | ||| || ||||||||| ||| || | || ||||| || Sbjct 2376 ATCAAACTAGAAGTTATCAAGGAACCATGCATAGCATTGAATAGGGAGCCGCCGAATACA 2435 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || ||||||||||| || || || || || ||||||||||| Sbjct 2436 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACA 2495 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||||||||| ||||||||||| || || |||||||| |||||| |||||| ||||| Sbjct 2496 ATCATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 2555 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | || || | ||||| || |||| ||| || | | || | | |||||||| | Sbjct 2556 CCAATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCAACAGGAGTTAAATATGCAAAA 2615 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| |||| ||| || || | | || | |||||||| | || || Sbjct 2616 GCAATCCAAGGTCGCATACCCAGACGGAAACTAATTTCCCACTCACGACCCATGTAACAA 2675 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| |||| ||| || || | ||||||| |||| Sbjct 2676 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACAGTTGTATAACCAC 2735 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | ||||||||||| ||||||||||| | ||||| || ||| | Sbjct 2736 TCATCAACGGATGTTGCTTCCCAGATTGGGTAAAAATGCAAACCGATAGCTGCAGAAGTA 2795 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || ||||| || |||| |||||| || | || || || ||||| || ||| Sbjct 2796 GGAATAATGGCACCTGAGATAATATCGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCA 2855 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGT 26775 || || ||||| ||||| || || || || | |||||||||| ||||| ||| | ||| Sbjct 2856 CGAATACCATCAATATCCACTGGAGGAGCAACAATGAAGGCAATAATAAATACA-GAAGT 2914 Query 26776 GGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTC 26835 || | | |||| || ||||| | || || | |||||| | || |||||||| || Sbjct 2915 TGCGGTCAATAAGGTAGGGATCATCAAAACACCAACCCATCCAATGTAAAGACGGTTTTC 2974 Query 26836 AGTACTTGTAACCCACTCACAAAA 26859 || || || | ||| | ||| || Sbjct 2975 GGTGCTGGTTATCCAGTTACAGAA 2998 >seq585748 Length=906 Score = 372 bits (412), Expect = 9e-99 Identities = 588/840 (70%), Gaps = 2/840 (0%) Strand=Plus/Plus Query 26006 TTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCA 26065 || ||||| |||| ||| || ||||| |||| ||||| | || || | | | || || Sbjct 2 TTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACTAGATACCC 61 Query 26066 ACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATAC 26125 || || ||||||| ||| || ||||| || | ||||| ||| || ||||| ||| | Sbjct 62 ACTACAGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCAAAT 121 Query 26126 TGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCT 26185 || || || | || ||||| || || || || || ||||||||||| || ||||| ||| Sbjct 122 TGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCCTCT 181 Query 26186 TGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAG 26245 || ||||| || || || | ||| || | | ||||| ||||| || | Sbjct 182 TGACCAAATTTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 241 Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305 ||| | ||||| || ||||||| | ||| || | || ||||| || ||||| || Sbjct 242 GAACTTACCAAGGAACCATGCATAGAACTGAATAGGGAGCCGCCGAATACACCAGCTACG 301 Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365 || ||| || ||||||||||| || || || || || || |||||||| | ||||||| Sbjct 302 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAG 361 Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGA 26425 || ||||||||||| || || |||||||| |||||| |||||| ||||| |||| || Sbjct 362 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG 421 Query 26426 TAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCAT 26485 || | ||||| || || | | || | | || |||| |||||||||| ||||| Sbjct 422 TAGATCAAGAAAACAGCAGTAACAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAA 481 Query 26486 GGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCT 26545 |||| ||| || || | | || |||||||||| | || || ||||| || Sbjct 482 GGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCA 541 Query 26546 ATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGT 26605 | ||||| ||| | | ||| |||| ||| || || || ||||||| |||||| || | Sbjct 542 AGTAAGATGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCACTCATCAACG 601 Query 26606 GTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACT 26665 | | ||||||||||| ||||||||||| | ||||||| ||| | || | | Sbjct 602 GATGCTGCTTCCCAGATTGGGTAAAAATGCAAATCGATTGCTGCAGAAGTAGGAATAATG 661 Query 26666 GCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCA 26725 || ||||| || |||||||||||||| | || || || ||||| || ||||| || ||| Sbjct 662 GCACCTGAGATAATATTGTTTCCGTAAAGTAGAGACCCAGAAACAGGTTCACGAATACCA 721 Query 26726 TCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAG 26784 || ||||| || || || || | ||||| |||| ||||| ||| ||| || | | Sbjct 722 TCAATATCCACTGGAGGAGCAGTAATGAAAGCAATAATAAATACA-AAAGTTGCGGTCAA 780 Query 26785 TAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGT 26844 |||| || ||||| | || || |||||||| | || |||||||| || || || || Sbjct 781 TAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGT 840 >seq585752 Length=1498 Score = 259 bits (286), Expect = 1e-64 Identities = 446/644 (69%), Gaps = 3/644 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 ||||| || || || ||||||||||||| | || ||||||||||| | || |||||| Sbjct 817 GCTAAATCTAGAGGGAAGTTATGAGCATGAGTTTCATGCATAACTTCCATACCAAGGTTA 876 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || || || | | ||||||| | ||| |||| | || | ||| |||| || Sbjct 877 GCACGATTGATGATATCAGCCTAAGTATTAATTAACGG-CCTTGGCTATCAACTATAGAT 935 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||| | |||| ||| || |||| || ||||| | || || | | Sbjct 936 TGGTTGAAATTGAAATCGTTTAAGTTGAAAACCATAGTTGTAATACCTAAAGTAGTGAAC 995 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 | | || | || ||||||| ||| || ||||| || | ||||| ||| || ||| Sbjct 996 TAGACACCTAGTACAGGCCAAGAAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAA 1055 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || | ||| || || || | || ||||| || || || || || ||||||||||| || Sbjct 1056 CTAGTATATTGGAAGATCAGTCGACCAAAATAACCATGAGCGGCTACAATATTATAAGTT 1115 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| ||| | || || || | | | || | | ||||| ||||| | Sbjct 1116 TCTTCCTCTTGACCACATTTGTAACCTTCACTAGTGGATTCATTTTCTGTGGTTTCCCTA 1175 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| || || || | ||||||| ||| | | || ||||| || Sbjct 1176 ATCAAACTAGAAGTTACAAAGGAACCATTCATAGCATTGAATAAGGAGCCGCCGAATACA 1235 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || ||||||||||| || || || || | || |||||||| Sbjct 1236 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTTAGCCTGGAATACA 1295 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||||||||| ||||||||||| || || |||||||| |||||| |||||| ||||| Sbjct 1296 ATCATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 1355 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAG-TGGTGCTGTATATGCAAC 26475 |||| | || | |||||| || || ||| || | ||| | |||| ||||||||| Sbjct 1356 CCGATCTGGTAGATTAAGAAAACAACGGTAGCAGCTG-TAGCAAGAGCTGAATATGCAAC 1414 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACT 26519 || ||||| | || ||| || || | || |||||||||| Sbjct 1415 AACAATCCAAGATCGCATACCCAGAAGGAAACTAAGTTCCCACT 1458 >seq492030 Length=881 Score = 244 bits (270), Expect = 3e-60 Identities = 336/470 (71%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 25951 ATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGTTAAAGTTAAA 26010 ||||||||| ||| |||| || | | ||| ||||| || ||||| || || || Sbjct 868 ATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGATTGGTTGAAATTGAA 809 Query 26011 ACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAAC 26070 ||| |||| ||| || ||||| |||| ||||| | || || | ||| || || || || Sbjct 808 ACCGTTTAAGTTGAAGGCCATAGTGCTAATACCTAAAGCAGTGAACCAGATACCCACTAC 749 Query 26071 CGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAA 26130 ||||||| ||| || ||||| || | ||||| ||| || ||||| ||||| || || Sbjct 748 AGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCATATTGGAA 689 Query 26131 AATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCC 26190 || | || ||||| || || || || || ||||||||||| || ||||| ||||| || Sbjct 688 GATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCCTCTTGACC 629 Query 26191 AAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGT 26250 ||| || || || | ||| || | | ||||| ||||| || | ||||| Sbjct 628 AAATTTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGT 569 Query 26251 AACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGC 26310 ||||| | ||||||||| ||| || | || ||||| || ||||| || || Sbjct 568 TACCAAGGAATCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAA 509 Query 26311 CATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAA 26370 ||| || ||||||||||| || || || || || || | |||||| | ||||||||| || Sbjct 508 CATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATCATAAAGTTGAA 449 Query 26371 AGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGA 26420 ||||||||| || || |||||||| |||||| |||||| ||||| |||| Sbjct 448 AGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGA 399 >seq567144 Length=1974 Score = 113 bits (124), Expect = 1e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 ||||| || || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 351 GCTAAATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 292 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || || || | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 291 GCACGATTGATGATATCAGCCCAAGTACTAATTACACGGCCTTGACTATCAACTACAGAT 232 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 ||||| || || ||||| |||| ||| || ||||| |||| ||||| Sbjct 231 TGGTTGAAATTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACC 185 >seq126251 Length=485 Score = 86.0 bits (94), Expect = 2e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||| ||||| | | ||| |||| ||| || || || ||||||| |||| Sbjct 200 GCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCAC 141 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 | || | | ||||||||||| ||||||||||| | ||||| || | | | Sbjct 140 TTATCAATGGATGTTGCTTCCCAGATTGGGTAAAAATGCAAACCGATAGCTGCAAAAGTA 81 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || | ||| || |||||||||| ||| ||| | || | |||| || ||| Sbjct 80 GGAATAATGGCACATGAGATAATATTGTTTCTGTAAATTCAAGACCTAGAAATAGGTTCA 21 Query 26717 CGTATGCCATCTATATCTAC 26736 | || ||||| ||||| || Sbjct 20 CAAATACCATCAATATCCAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146318755304960