Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq784841 444 2e-120 seq585748 394 3e-105 seq585752 260 4e-65 seq492030 232 2e-56 seq126251 100 8e-17 seq567144 98.7 3e-16 >seq784841 Length=3474 Score = 444 bits (492), Expect = 2e-120 Identities = 695/989 (70%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || |||||| || ||||| ||||| ||||| ||||| || ||||| ||||||| ||| || Sbjct 2012 AGTAGCTAAATCCAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCAGACCAAG 2071 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | || | | ||||||||||||| ||| || || | | || ||||| Sbjct 2072 GTTAGCACGATTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTAC 2131 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || |||| || || ||||| || | ||| ||||||||||| ||||| | | || Sbjct 2132 AGATTGGTAGAAATTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 2191 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 | ||| || || | || || ||||| | | |||||||||| | ||| ||||| Sbjct 2192 GAACCAGATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTT 2251 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 || || |||||| ||||| |||| ||||| ||||| || || ||||| || ||||| Sbjct 2252 AAAACTAGTATATTGGAATATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATA 2311 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || |||||||| || || || | || |||||| |||| ||||| || Sbjct 2312 AGTTTCTTCCTCTTGACCAAATTTGTAACCTTCATTAGTAGATTCATTTTCTGTGGTTTC 2371 Query 40889 CCGAATGATTGAGGAAGTAA-CAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAA 40947 || || | ||||| | ||||| || ||||||||| || | | || || | Sbjct 2372 CCTGATCAAACTAGAAGTTATCAAGGAA-CCATGCATAGCATTGAATAGGGAGCCGCCGA 2430 Query 40948 AGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGA 41007 | || || || ||||| | ||| || ||||||||||| || |||||||| || ||||||| Sbjct 2431 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGA 2490 Query 41008 AGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAAC 41067 | |||| ||| |||||||| || ||| ||||||| ||||||||||||||| ||| | Sbjct 2491 ATACAATCATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTC 2550 Query 41068 CCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATG 41127 | ||||| | ||| || | ||||| ||||| | ||| |||| | |||| | |||| Sbjct 2551 CTTGACCAATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCAACAGGAGTTAAATATG 2610 Query 41128 CCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGT 41187 | | | ||||| |||| |||||| || | | | || |||||||| | ||| || Sbjct 2611 CAAAAGCAATCCAAGGTCGCATACCCAGACGGAAACTAATTTCCCACTCACGACCCATGT 2670 Query 41188 ATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATA 41247 | ||||| || | ||| ||||| | ||||| |||| ||| || || | |||||||| Sbjct 2671 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACAGTTGTATA 2730 Query 41248 GCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAG 41307 |||||| || | | ||||||||||||||||| ||||| | ||||| || || Sbjct 2731 ACCACTCATCAACGGATGTTGCTTCCCAGATTGGGTAAAAATGCAAACCGATAGCTGCAG 2790 Query 41308 AGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGG 41367 | | |||| | || || || ||||||| ||| || || | || || || ||||| | Sbjct 2791 AAGTAGGAATAATGGCACCTGAGATAATATCGTTTCCATAAAGTAGAGACCCAGAAACAG 2850 Query 41368 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACAT 41426 | ||||| || ||||| ||||| || || || || | || ||||| || || || ||| Sbjct 2851 GTTCACGAATACCATCAATATCCACTGGAGGAGCAACAATGAAGGCAATAATAAATACA- 2909 Query 41427 GTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGG 41486 | || || || | ||| | || ||||| | ||||||| ||| || | ||| || ||| Sbjct 2910 GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAACCCATCCAATGTAAAGACGG 2969 Query 41487 TTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || |||||||| || | ||||||||| || Sbjct 2970 TTTTCGGTGCTGGTTATCCAGTTACAGAA 2998 >seq585748 Length=906 Score = 394 bits (436), Expect = 3e-105 Identities = 602/855 (70%), Gaps = 2/855 (0%) Strand=Plus/Plus Query 40662 TTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCA 40721 || ||||| || | ||| ||||||||||| ||||| | | || | | | || || Sbjct 2 TTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACTAGATACCC 61 Query 40722 ATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATAT 40781 | || || ||||| | || |||||||||| | ||| |||||||| |||| || Sbjct 62 ACTACAGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCAAAT 121 Query 40782 TGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCC 40841 || || || |||| ||||| ||||| || || ||||| || |||||||| || | || Sbjct 122 TGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCCTCT 181 Query 40842 TGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAG 40901 |||||||| || || || | || |||||| |||| ||||| |||| || | Sbjct 182 TGACCAAATTTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 241 Query 40902 GAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACG 40961 ||| | || | | || ||||||| | || | | || || || || || || ||| Sbjct 242 GAACTTACCAAGGAACCATGCATAGAACTGAATAGGGAGCCGCCGAATACACCAGCTACG 301 Query 40962 CCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAG 41021 || | ||| || ||||||||||| || |||||||| || || ||||| |||| ||| ||| Sbjct 302 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAG 361 Query 41022 TTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGA 41081 ||||| || ||| ||||||| ||||||||||||||| ||| || ||||||| ||| Sbjct 362 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG 421 Query 41082 TAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCAT 41141 || | ||||| ||||| | | |||| | ||||||| ||||| ||| ||||| Sbjct 422 TAGATCAAGAAAACAGCAGTAACAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAA 481 Query 41142 GGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCT 41201 |||| |||||| || | | | ||||||||||| | ||| ||| ||||| || Sbjct 482 GGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCA 541 Query 41202 ATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGT 41261 | ||| | ||| | ||||| |||| ||| || || |||||||||| |||||| || | Sbjct 542 AGTAAGATGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCACTCATCAACG 601 Query 41262 GTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACA 41321 | | ||||||||||||||||| ||||| | ||||||| ||| | |||| | Sbjct 602 GATGCTGCTTCCCAGATTGGGTAAAAATGCAAATCGATTGCTGCAGAAGTAGGAATAATG 661 Query 41322 GCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCA 41381 || || || ||||||||||| ||||| | || || || ||||| || ||||| || ||| Sbjct 662 GCACCTGAGATAATATTGTTTCCGTAAAGTAGAGACCCAGAAACAGGTTCACGAATACCA 721 Query 41382 TCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAG 41440 || ||||| || || || || | || || || || || || ||| || || || | Sbjct 722 TCAATATCCACTGGAGGAGCAGTAATGAAAGCAATAATAAATACA-AAAGTTGCGGTCAA 780 Query 41441 TAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGT 41500 ||| | || ||||| | ||||||||||| || | ||| || ||||| |||||||| || Sbjct 781 TAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGT 840 Query 41501 GACCCAGTTACAAAA 41515 | | ||||||| || Sbjct 841 TATCGAGTTACAGAA 855 >seq585752 Length=1498 Score = 260 bits (288), Expect = 4e-65 Identities = 454/653 (70%), Gaps = 13/653 (2%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || |||||| |||||||| ||||| ||||| | | || ||||| ||||||||||| || Sbjct 813 AGCAGCTAAATCTAGAGGGAAGTTATGAGCATGAGTTTCATGCATAACTTCCATACCAAG 872 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTAC--CATTAGCG-TCTAC 40645 | | || | | ||||||| ||||| ||| | || | || || || || Sbjct 873 GTTAGCACGATTGATGATATCAGCCTAAGTATTAATTA----ACGGCCTTGGCTATCAAC 928 Query 40646 TACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGA 40705 || || ||||| || || ||| | || | ||| ||| ||||||| | ||||| | | Sbjct 929 TATAGATTGGTTGAAATTGAAATCGTTTAAGTTGAAAACCATAGTTGTAATACCTAAAGT 988 Query 40706 GGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATT 40765 || | | | | || | || || ||| | | || |||||||||| | ||| || Sbjct 989 AGTGAACTAGACACCTAGTACAGGCCAAGAAGCTAGGAAGAAGTGTAATGAACGAGAGTT 1048 Query 40766 GTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTT 40825 |||||| || |||||| || || |||| |||||| ||||| || || ||||| || || Sbjct 1049 GTTGAAACTAGTATATTGGAAGATCAGTCGACCAAAATAACCATGAGCGGCTACAATATT 1108 Query 40826 ATAAGTCTCGCCTTCCTGACCAAACTTATACCCGT-AGTTCTGTGATTCAGTTTCCGTGG 40884 |||||| || | || |||||| | || || || | | | || |||||| |||| |||| Sbjct 1109 ATAAGTTTCTTCCTCTTGACCACATTTGTAACCTTCACTAGTG-GATTCATTTTCTGTGG 1167 Query 40885 TCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCAC 40944 | |||| ||| | ||||| |||| | || | ||||||| || || | || | Sbjct 1168 TTTCCCTAATCAAACTAGAAGTTACAAAGGAACCATTCATAGCATTGAATAAGGAGCCGC 1227 Query 40945 CAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTT 41004 | || || || || || || | ||| || ||||||||||| || |||||||| | || | Sbjct 1228 CGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTTAGCCT 1287 Query 41005 GGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAG 41064 |||| |||| ||| |||||||| || ||| ||||||| ||||||||||||||| ||| Sbjct 1288 GGAATACAATCATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAAC 1347 Query 41065 AACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTG--ACAATGGAGCTGT 41122 || ||||||| | || | |||||| ||| | ||| |||| ||| |||||| Sbjct 1348 TTCCTTGACCGATCTGGTAGATTAAGAAAACAACGGTAGCAGCTGTAGCAA--GAGCTGA 1405 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACT 41175 ||||| |||| ||||| | || |||||| || | | ||||||||||| Sbjct 1406 ATATGCAACAACAATCCAAGATCGCATACCCAGAAGGAAACTAAGTTCCCACT 1458 >seq492030 Length=881 Score = 232 bits (256), Expect = 2e-56 Identities = 338/475 (71%), Gaps = 2/475 (0%) Strand=Plus/Minus Query 40607 ATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAAGTTAAA 40666 ||||||||||||| ||| || || | | || ||||| || ||||| || || || Sbjct 868 ATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGATTGGTTGAAATTGAA 809 Query 40667 ACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAAC 40726 ||| || | ||| || |||||||| ||||| | | || | ||| || || | || Sbjct 808 ACCGTTTAAGTTGAAGGCCATAGTGCTAATACCTAAAGCAGTGAACCAGATACCCACTAC 749 Query 40727 CGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAA 40786 || ||||| | || |||||||||| | ||| |||||||| ||||||||| || Sbjct 748 AGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCATATTGGAA 689 Query 40787 TATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACC 40846 || |||| ||||| ||||| || || ||||| || |||||||| || | || ||||| Sbjct 688 GATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCCTCTTGACC 629 Query 40847 AAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGT 40906 ||| || || || | || |||||| |||| ||||| |||| || | ||||| Sbjct 628 AAATTTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGT 569 Query 40907 AAC-AAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGA 40965 || |||| || ||||||||| || | | || || || || || || ||||| | Sbjct 568 TACCAAGGAATCA-TGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTA 510 Query 40966 GCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGA 41025 ||| || ||||||||||| || |||||||| || || | ||| |||| ||| ||||||| Sbjct 509 ACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATCATAAAGTTGA 450 Query 41026 ATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGG 41080 | || ||| ||||||| ||||||||||||||| ||| || ||||||| ||| Sbjct 449 AAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGG 395 >seq126251 Length=485 Score = 100 bits (110), Expect = 8e-17 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 41193 GCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCAC 41252 ||||| || | ||||||||| | ||||| |||| ||| || || |||||||||| |||| Sbjct 200 GCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCAC 141 Query 41253 TCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTC 41312 | || | | ||||||||||||||||| ||||| | ||||| || | | | Sbjct 140 TTATCAATGGATGTTGCTTCCCAGATTGGGTAAAAATGCAAACCGATAGCTGCAAAAGTA 81 Query 41313 GGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCA 41372 |||| | || | || ||||||||||| | ||| ||| | || | |||| || ||| Sbjct 80 GGAATAATGGCACATGAGATAATATTGTTTCTGTAAATTCAAGACCTAGAAATAGGTTCA 21 Query 41373 CGTATGCCATCTATATCTAC 41392 | || ||||| ||||| || Sbjct 20 CAAATACCATCAATATCCAC 1 >seq567144 Length=1974 Score = 98.7 bits (108), Expect = 3e-16 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || |||||| |||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 355 AGCAGCTAAATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 296 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | || | | ||||||||||||| ||| || || | | || ||||| Sbjct 295 GTTAGCACGATTGATGATATCAGCCCAAGTACTAATTACACGGCCTTGACTATCAACTAC 236 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGT 40690 || ||||| || || ||||| || | ||| ||||||||||| Sbjct 235 AGATTGGTTGAAATTGAAACCGTTTAAGTTGAAAGCCATAGT 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142346974533792