Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq784841 527 7e-145 seq585748 491 5e-134 seq585752 361 6e-95 seq492030 327 1e-84 seq572160 129 7e-25 seq567144 114 1e-20 seq572830 96.9 4e-15 seq520077 82.4 9e-11 >seq784841 Length=3474 Score = 527 bits (584), Expect = 7e-145 Identities = 684/941 (73%), Gaps = 8/941 (1%) Strand=Plus/Plus Query 67368 TCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTG 67427 || ||||||||||| ||||| ||||| || ||||||||||||| ||||| || | Sbjct 2022 TCCAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCAGACCAAGGTTAGCACGA 2081 Query 67428 TTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGG 67484 || | ||| || ||||||||| ||| || || ||| ||||| || |||||| Sbjct 2082 TTGATGATATCAGCCCAAGTATTAATTAC---ACGGCCTTGACTATCAACTACAGATTGG 2138 Query 67485 TTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAG 67544 | ||| ||||||||||| | |||||| |||||||| | ||| | |||||||||||| Sbjct 2139 TAGAAATTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACCAG 2198 Query 67545 ATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGAT 67604 || | || ||||| | ||||| | ||||||||| | | |||||||| ||| Sbjct 2199 ATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAAAACTA 2258 Query 67605 GCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCT 67664 | ||| ||||| |||| || || || || |||||||| || ||||| || ||||| ||| Sbjct 2259 GTATATTGGAATATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCT 2318 Query 67665 TCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATA 67724 || ||||| || || |||||||| | || || || | || || ||||| ||||| Sbjct 2319 TCCTCTTGACCAAATTTGTAACCTTCATTAGTAGATTCATTTTCTGTGGTTTCCCTGATC 2378 Query 67725 AGAGAAGAAG-TAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACC 67783 | | ||||| || |||| ||||| ||||||||| | || || || || ||||||||||| Sbjct 2379 AAACTAGAAGTTATCAAG-GAACCATGCATAGCATTGAATAGGGAGCCGCCGAATACACC 2437 Query 67784 TGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAA 67843 ||||| || | ||| || |||||||||||||||||||||||||| |||||||| || | Sbjct 2438 AGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAAT 2497 Query 67844 CATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACC 67903 ||| |||| |||||||||||||| || |||||||| | ||||| ||| |||||||| Sbjct 2498 CATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACC 2557 Query 67904 GAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACA 67963 | || |||| |||||| ||||||| || || | || |||| | ||||| | | Sbjct 2558 AATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCAACAGGAGTTAAATATGCAAAAGC 2617 Query 67964 GATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGT 68023 |||||||| |||||||| |||||| || || |||||||| |||||| ||| | Sbjct 2618 AATCCAAGGTCGCATACCCAGACGGAAACTAATTTCCCACTCACGACCCATGTAACAAGC 2677 Query 68024 GATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTC 68083 | || | | |||||| | || | |||| |||| |||| || || |||||||| Sbjct 2678 TACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACAGTTGTATAACCACTC 2737 Query 68084 ATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGG 68143 ||| | | || |||||||||||| || || || || | |||||| || ||| |||| Sbjct 2738 ATCAACGGATGTTGCTTCCCAGATTGGGTAAAAATGCAAACCGATAGCTGCAGAAGTAGG 2797 Query 68144 AACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCT 68203 || || ||||| || || || | ||| || || | || || || | ||||||||| | Sbjct 2798 AATAATGGCACCTGAGATAATATCGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCACG 2857 Query 68204 GATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGC 68263 |||||||| ||||| |||||||| || ||||||| ||||| || || || | ||| Sbjct 2858 AATACCATCAATATCCACTGGAGGAGCAACAATGAAGGCAATAATAAATACAGAAGTTGC 2917 Query 68264 TGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 | | ||| ||| |||||||| ||||| | ||| |||| Sbjct 2918 GGTCAATAAGGTAGGGATCATCAAAACACCAACCCATCCAA 2958 >seq585748 Length=906 Score = 491 bits (544), Expect = 5e-134 Identities = 600/817 (73%), Gaps = 6/817 (1%) Strand=Plus/Plus Query 67491 TTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAG 67550 ||||||||||| | |||||| |||||||| | ||| | ||||||||| |||| | Sbjct 2 TTGAAACCGTTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACTAGATACCC 61 Query 67551 ACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATAC 67610 || ||||| | ||||| ||||||||||| | | |||||||||||| ||| | Sbjct 62 ACTACAGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCAAAT 121 Query 67611 TGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCT 67670 |||||||||| || || || || |||||||| || ||||| || ||||| ||||| ||| Sbjct 122 TGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCCTCT 181 Query 67671 TGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAA 67730 || || || |||||||| | || || || | || || ||||| ||||| | | | Sbjct 182 TGACCAAATTTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 241 Query 67731 GAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACT 67790 ||| | || | ||||| ||||||| ||| || || || || ||||||||||| ||||| Sbjct 242 GAACTTACCAAGGAACCATGCATAGAACTGAATAGGGAGCCGCCGAATACACCAGCTACG 301 Query 67791 CCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAG 67850 || | ||| || |||||||||||||||||||||||||| || ||||| || | ||| || Sbjct 302 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAG 361 Query 67851 TTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGA 67910 || |||||||||||||| || |||||||| | ||||| ||| |||||||||| || Sbjct 362 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG 421 Query 67911 TAGACCAAGAACACAGC---GAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATC 67967 |||| |||||| ||||| | |||||| || ||||| || ||||| ||| ||| Sbjct 422 TAGATCAAGAAAACAGCAGTAACAGCTGCA---ACAGGAGCTGAATATGCAACAGCAATC 478 Query 67968 CAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATT 68027 ||||| |||||||| |||||| || ||||||||||| |||||| ||| | | Sbjct 479 CAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACA 538 Query 68028 CCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCT 68087 || | | || ||| | || | |||| |||| ||||| || || ||||||||||| Sbjct 539 CCAAGTAAGATGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCACTCATCA 598 Query 68088 AGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACA 68147 | | ||||||||||||||| || || || || | | ||||||| ||| |||||| | Sbjct 599 ACGGATGCTGCTTCCCAGATTGGGTAAAAATGCAAATCGATTGCTGCAGAAGTAGGAATA 658 Query 68148 ACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATA 68207 | ||||| || || || ||||| ||||| | || || || | ||||||||| | ||| Sbjct 659 ATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGACCCAGAAACAGGTTCACGAATA 718 Query 68208 CCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCG 68267 ||||| ||||| |||||||| || | |||||| ||||| || || | | ||| | Sbjct 719 CCATCAATATCCACTGGAGGAGCAGTAATGAAAGCAATAATAAATACAAAAGTTGCGGTC 778 Query 68268 AGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 | ||| ||| |||||||| ||||| ||||| |||| Sbjct 779 AATAAGGTAGGGATCATCAAAACACCAAACCATCCAA 815 >seq585752 Length=1498 Score = 361 bits (400), Expect = 6e-95 Identities = 477/658 (72%), Gaps = 9/658 (1%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| | || ||||||||||| ||||| | | || |||||||||||||| ||||| Sbjct 813 AGCAGCTAAATCTAGAGGGAAGTTATGAGCATGAGTTTCATGCATAACTTCCATACCAAG 872 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | || | ||| || ||| ||||| ||| | || ||| | ||||| Sbjct 873 GTTAGCACGATTGATGATATCAGCCTAAGTATTAATTA----ACGGCCTTGGCTATCAAC 928 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 | ||||||||||| |||||| |||| | |||||| ||||||||| | ||| | | Sbjct 929 TATAGATTGGTTGAAATTGAAATCGTTTAAGTTGAAAACCATAGTTGTAATACCTAAAGT 988 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||||||| ||| | | ||||| | | ||| ||||||||||| | | ||||| Sbjct 989 AGTGAACTAGACACCTAGTACAGGCCAAGAAGCTAGGAAGAAGTGTAATGAACGAGAGTT 1048 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| | ||| |||||||||| ||||| || || |||||||| || ||||| || Sbjct 1049 GTTGAAACTAGTATATTGGAAGATCAGTCGACCAAAATAACCATGAGCGGCTACAATATT 1108 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGT-AGTTCTGTGACTCTTGCTCAGTAG 67713 ||||| ||||| ||||| || | |||||||| | | | || || || | || || | Sbjct 1109 ATAAGTTTCTTCCTCTTGACCACATTTGTAACCTTCACTAGTG-GATTCATTTTCTGTGG 1167 Query 67714 TTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCAC 67773 |||| || || | | |||||| |||| ||||| | ||||||| | || | || || | Sbjct 1168 TTTCCCTAATCAAACTAGAAGTTACAAAGGAACCATTCATAGCATTGAATAAGGAGCCGC 1227 Query 67774 CGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTT 67833 |||||||||| ||||| || | ||| || ||||||||||||||||||||||||| || | Sbjct 1228 CGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTTAGCCT 1287 Query 67834 GGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAG 67893 |||| || | ||| |||| |||||||||||||| || |||||||| | ||||| ||| Sbjct 1288 GGAATACAATCATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAAC 1347 Query 67894 AACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGT 67953 |||||||||| | |||| ||||| ||| || || || | | |||| || | Sbjct 1348 TTCCTTGACCGATCTGGTAGATTAAGAAAACAACGGTAGCAGCTGTAGCAAGAGCTGAAT 1407 Query 67954 ATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC 68011 |||| ||| ||||||| |||||||| ||| || || ||||||||||| | |||| Sbjct 1408 ATGCAACAACAATCCAAGATCGCATACCCAGAAGGAAACTAAGTTCCCACTCATGACC 1465 >seq492030 Length=881 Score = 327 bits (362), Expect = 1e-84 Identities = 334/436 (77%), Gaps = 0/436 (0%) Strand=Plus/Minus Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| || ||||||||||| ||||||||||| | |||||| |||||||| | ||| Sbjct 834 TCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTTGAAGGCCATAGTGCTAATACCT 775 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | |||||||||||||| | || ||||| | ||||| ||||||||||| | | Sbjct 774 AAAGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGA 715 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| ||||| |||||||||| || || || || |||||||| || ||| Sbjct 714 GAGTTGTTGAAACTAGCATATTGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTACA 655 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||| ||||| || || |||||||| | || || || | || Sbjct 654 ATATTATAAGTTTCTTCCTCTTGACCAAATTTGTAACCTTCATTAGCGGATTCATTTTCT 595 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | |||||| || | ||| | ||||||||||| || || || Sbjct 594 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAATCATGCATAGCACTGAATAGGGAG 535 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || ||||||||||| ||||| || | ||| || |||||||||||||||||||||||||| Sbjct 534 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 475 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 || | ||| || | ||| |||| |||||||||||||| || |||||||| | ||||| Sbjct 474 GCCTAGAATACAATCATAAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 415 Query 67890 AAAGAACCTTGACCGA 67905 ||| |||||||||| Sbjct 414 AAACTTCCTTGACCGA 399 >seq572160 Length=4591 Score = 129 bits (142), Expect = 7e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 67605 GCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCT 67664 ||||| |||||||||| | || || || |||||||| || ||||| | ||||| ||| Sbjct 4427 GCATATTGGAAGATCAGTTGGCCAAAATAACCATGAGCGGCTACAATACTATAAGTTTCT 4368 Query 67665 TCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATA 67724 || ||||| || || |||||||| | || || || | || | ||||| ||||| Sbjct 4367 TCCTCTTGACCAAATTTGTAACCTTCATTAGCGGATTCATTTTCTATGGTTTCCCTGATC 4308 Query 67725 AGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCT 67784 | | |||||| || | ||||| |||||| |||| || || || || ||||||||||| Sbjct 4307 AAACTAGAAGTTACCAAGGAACCATGCATAACACTGAATAGGGAGCCGCCGAATACACCA 4248 Query 67785 GCTACTCCAAGCATATGGAATGGGTG 67810 ||||| || | ||| || |||||||| Sbjct 4247 GCTACGCCTAACATGTGAAATGGGTG 4222 >seq567144 Length=1974 Score = 114 bits (126), Expect = 1e-20 Identities = 125/165 (76%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| | || ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 355 AGCAGCTAAATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 296 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAAC 67474 || | || | ||| || ||||||||| ||| || || ||| ||||| Sbjct 295 GTTAGCACGATTGATGATATCAGCCCAAGTACTAATTAC---ACGGCCTTGACTATCAAC 239 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGT 67519 || ||||||||||| ||||||||||| | |||||| |||||||| Sbjct 238 TACAGATTGGTTGAAATTGAAACCGTTTAAGTTGAAAGCCATAGT 194 >seq572830 Length=4883 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 67611 TGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCT 67670 |||||||||| || || || || |||||||| || ||||| || ||||| ||||| ||| Sbjct 641 TGGAAGATCAGTCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTTTCTTCCTCT 700 Query 67671 TGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAA 67730 || || || |||||||| | || || || | || || ||||| ||||| | | | Sbjct 701 TGACCAAATTTGTAACCTTCATTAGTGGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 760 Query 67731 GAAG-TAACAAGAGAACCGTGCATAGCACT 67759 |||| || |||| ||||| ||||||||||| Sbjct 761 GAAGGTACCAAG-GAACCATGCATAGCACT 789 >seq520077 Length=706 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 67707 TCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGT 67766 || || ||||| ||||| | | |||||| || | ||||| ||||||||||| || || Sbjct 386 TCTGTGGTTTCCCTGATTAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGG 327 Query 67767 GAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGT 67809 || || ||||||||||| ||||| || | ||| || ||||||| Sbjct 326 GAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGT 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561318208030080