Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq621678 105 1e-17 seq500796 105 1e-17 seq502676 100 4e-16 seq553100 96.9 5e-15 seq731700 91.5 2e-13 seq782951 86.0 9e-12 >seq621678 Length=9740 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | |||||||||||||||||||| ||||| | || || || ||| Sbjct 535 ATGCAGATATTTGTGAAAACATTGACTGGAAAAACCATTACTCTGGAGGTGGAGAGCTCT 476 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| || || || || ||||| ||||| || ||||| ||| Sbjct 475 GACACTATTGATAATGTCAAAGCAAAGATTCAGGACAAAGAGGGCATCCCACCAGATCAA 416 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || |||| | ||| || ||||||||||| ||| Sbjct 415 CAGAGGCTGATATTTGCGGGCAAGCAGCTCGAGGAT 380 >seq500796 Length=7474 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| |||||||| ||||| || || || || || || || Sbjct 2794 ATGCAAATATTTGTCAAAACTTTGACTGGGAAAACAATCACTTTGGAGGTTGAGAGCTCA 2853 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| ||||| ||||| || ||||| || || || || ||| Sbjct 2854 GATACAATTGATAATGTGAAGGCAAAAATTCAAGACAAGGAAGGGATCCCACCGGATCAA 2913 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| || |||||||| |||||| | ||| | ||||||| ||| Sbjct 2914 CAACGCCTCATTTTTGCTGGGAAGCAGCTTGAAGATGGACGCACTCTGGCAGATTACAAT 2973 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 2974 ATCCAGAAGGAGTCCACCCTTCA 2996 Score = 93.3 bits (102), Expect = 6e-14 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || | ||||| || || |||||| | ||||| ||| || Sbjct 2337 AATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATTACACTGGAAGTTGAAAGCTC 2396 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || || || || ||||| || || ||||||||||| |||||||| || Sbjct 2397 AGATACAATAGACAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATCCCTCCAGACCA 2456 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||| | || ||||| || || |||||| || || | ||||||| | Sbjct 2457 GCAAAGATTGATCTTCGCTGGTAAACAACTTGAAGATGGAAGGACACTTGCAGATTACA- 2515 Query 156002 TATATCCAAAGAG 156014 | ||||||| || Sbjct 2516 -ACATCCAAAAAG 2527 >seq502676 Length=6550 Score = 100 bits (110), Expect = 4e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || ||| ||||||||||||| || || | ||||| || |||| Sbjct 1305 ATGCAGATATTTGTCAAGACACTGACTGGAAAAACCATCACTCTTGAAGTGGAGAGTTCT 1364 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| || ||||| ||||||||||| || || || || ||| Sbjct 1365 GACACAATTGATAATGTCAAAGCAAAGATACAGGATAAAGAAGGTATCCCACCCGATCAA 1424 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || |||||||| || ||| | | ||| | | ||||||| Sbjct 1425 CAGAGGCTTATATTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTGGCTGATTATA-- 1482 Query 156003 ATATCCAAA--GAGGCGACGCTTCAT 156026 | ||||||| ||| | || || ||| Sbjct 1483 ACATCCAAAAGGAGTCTACTCTGCAT 1508 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| |||| || ||||| ||||| | ||||| || || Sbjct 1077 ATGCAGATTTTTGTCAAAACCCTGACCGGTAAAACAATTACTCTGGAAGTTGAGAGCTCC 1136 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| ||||| ||||| ||||||||||| || ||||| || Sbjct 1137 GACACAATTGATAACGTGAAAGCCAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAG 1196 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||| | ||| || || || | ||||| || ||| | ||||||| || Sbjct 1197 CAGAGGCTGATATTTGCAGGCAAACAATTGGAAGACGGGAGGACTCTGGCAGATTACAA 1255 >seq553100 Length=2664 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| |||||||||||||| ||||| |||| || || ||| Sbjct 654 AATGCAGATCTTCGTCAAAACCTTGACTGGAAAAACCATTACCCTAGAGGTGGACAGTTC 713 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||||| || || || || || || |||||||| ||| |||| Sbjct 714 AGACGCAGTCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTAACAAACA 773 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | |||| | ||||||||||||||||||| || || ||| | ||||||| || Sbjct 774 GCAGCGCCTGATATTTGCCGGTAAGCAGCTCGAAAATGGGAGGACTCTGGCAGATTACAA 833 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | | ||||| | || || ||||| || || || || |||||||| Sbjct 834 TGTTCAGAAAGATTCCACTCTACATTTGGTTTTGAGGTTGAGAGGCGG 881 >seq731700 Length=3081 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||| || || || ||||| | ||||| || ||| Sbjct 2059 ATGCAAATCTTCGTCAAGACCCTGACAGGGAAGACCATTACCCTGGAAGTGGAGAGTTCG 2118 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||| || ||||| || ||||| || || ||||| || Sbjct 2119 GACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCACCAGACCAG 2178 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||||| ||| || |||||||| || ||| ||| || || | ||||||||| Sbjct 2179 CAGAGGCTGATTTTTGCTGGGAAGCAGCTAGAGGATGGCAGGACCTTGGCGGATTATAAT 2238 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| |||| || || || ||| Sbjct 2239 ATTCAGAAGGAGTCGACTCTGCACTTGGTG 2268 >seq782951 Length=1480 Score = 86.0 bits (94), Expect = 9e-12 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| ||| | || ||||| || ||||| | ||||| || |||| Sbjct 977 ATGCAGATCTTTGTTAAGACACTCACCGGAAAGACAATTACTCTGGAAGTTGAGAGTTCT 918 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || |||| || || || || || ||| |||| ||||||| || Sbjct 917 GACACCATTGACAATGTCAAAACCAAGATTCAGGACAATGAATGCATCTCTCCAGATCAG 858 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||| || ||||| |||||| ||| ||| | ||||||| Sbjct 857 CAGAGGCTAATCTTCGCCGGCAAACAGCTGGAAGATGGCAGGACTCGTGCTGATTATA-- 800 Query 156003 ATATCCAAA 156011 ||||||||| Sbjct 799 ATATCCAAA 791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 724605535660800