Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq621678 127 4e-24 seq502676 114 2e-20 seq690132 113 8e-20 seq500796 109 1e-18 seq693518 105 1e-17 seq659339 93.3 8e-14 seq603803 89.7 9e-13 seq167167 89.7 9e-13 >seq621678 Length=9740 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || | || || ||||| ||||| | ||| || ||| || ||||| Sbjct 534 ATACCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCC 593 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | | | || ||||||||||| || ||||| || | ||||| || || ||| Sbjct 594 GCCAAAGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGT 653 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || ||||| |||||| ||| || || || || || Sbjct 654 GGAATTCCTTCTTTGTCCTGAATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCA 713 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || |||| ||||| ||||||| ||||| | ||| |||||||| Sbjct 714 ACTTCCAGCGTAACTGTTTTGCCAGTTAGGGTTTTGACGAAAATCTGCAT 763 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || ||||| | ||| | ||| || || || ||||| | Sbjct 308 ACCACCACGAAGGCGAAGAACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGC 367 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | |||| | || || | || || || ||||| || | |||||||| || ||||| Sbjct 368 AAGGGTTCGTCCATCCTCGAGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGG 427 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || ||||| || || || || ||| |||||| ||||| || || || || Sbjct 428 GATGCCCTCTTTGTCCTGAATCTTTGCTTTGACATTATCAATAGTGTCAGAGCTCTCCAC 487 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||||||||| ||||| |||||||| | ||||||||||| Sbjct 488 CTCCAGAGTAATGGTTTTTCCAGTCAATGTTTTCACAAATATCTGCAT 535 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 ||||||||| | || || ||||| ||||| | || | || | || |||||||| Sbjct 788 ATGTAAAGTGGATTCCTTCTGGATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAATTG 847 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 ||| ||||| ||||| ||||||||||| || ||||| || ||||| || || || || || Sbjct 848 TTTGCCAGCGAAAATCAATCTCTGTTGATCGGGTGGAATACCTTCCTTGTCCTGGATCTT 907 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 || || ||| || ||||| || || || || |||||||| || || || || Sbjct 908 GGCCTTAACGTTATCAATCGTATCAGAACTCTCAACCTCGAGAGTAATCGTCTTCCCCGT 967 Query 172046 TAATGTTTTAATGAATATCTGCAT 172069 || ||||| | || |||||||| Sbjct 968 TAGGGTTTTGACAAAGATCTGCAT 991 >seq502676 Length=6550 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| | ||| || | || | ||| | ||||| ||| || || |||||||| Sbjct 1535 AACACCACCACGAAGGCGGAGAACCAGATGCAGAGTAGACTCCTTTTGGATGTTATAATC 1476 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | | || || | || || | || || |||||||| || | |||||||| || || Sbjct 1475 AGCCAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAATATAAGCCTCTGTTGATCGGG 1416 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || ||||||||||| ||||| || ||| |||||| || || || || || Sbjct 1415 TGGGATACCTTCTTTATCCTGTATCTTTGCTTTGACATTATCAATTGTGTCAGAACTCTC 1356 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| |||||||| ||||| | ||| || | ||||||||||| Sbjct 1355 CACTTCAAGAGTGATGGTTTTTCCAGTCAGTGTCTTGACAAATATCTGCAT 1305 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || | | || | ||| ||||| | ||| || || || |||||| Sbjct 1306 ATACCACCACGCAGCCTAAGGACAAGATGCAAAGTCGACTCCTTTTGAACGTTGTAATCT 1247 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | |||| ||||||||||| || ||||| || | ||||| || || ||| Sbjct 1246 GCCAGAGTCCTCCCGTCTTCCAATTGTTTGCCTGCAAATATCAGCCTCTGCTGATCTGGT 1187 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| ||| || ||| || || || || || Sbjct 1186 GGAATGCCTTCTTTGTCTTGAATTTTGGCTTTCACGTTATCAATTGTGTCGGAGCTCTCA 1127 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| |||||||| || | ||||| | || |||||||| Sbjct 1126 ACTTCCAGAGTAATTGTTTTACCGGTCAGGGTTTTGACAAAAATCTGCAT 1077 >seq690132 Length=1697 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || | || || ||||| ||||| | ||| || ||| | ||||| Sbjct 1064 ATACCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGCTGTAATCC 1005 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | ||| | ||||||||||| || ||| | || | ||||| || | ||| Sbjct 1004 GCCAAAGTTTTTTCAACTTCCAATTGTTTGCCTGCACAGATGAGCCTCTGCTGATTCGGT 945 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || ||||| |||||||||| || || || || || Sbjct 944 GGAATCCCTTCTTTGTCCTGAATTTTGGCTTTTACATTATCAATTGTGTCGGAGCTCTCA 885 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || ||||| ||||| ||| ||| ||||| | ||| |||||||| Sbjct 884 ACTTCCAGCGTAATTGTTTTGCCAATTAGAGTTTTGACGAAAATCTGCAT 835 >seq500796 Length=7474 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | |||||| | || | ||| | |||| ||||| |||||| |||||| Sbjct 1883 ATGCCACCACGAAGTCGGAGGACAAGATGGAGGGTAGATTCTTTTTGAATATTGTAATCT 1824 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | ||| || ||||||||||| | ||||| || || || Sbjct 1823 GCAAGAGTTCTACCATCTTCAAGTTGCTTTCCAGCAAAAATAAGCCTCTGCTGATCTGGA 1764 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || ||| || ||||| || ||||| || || Sbjct 1763 GGAATCCCTTCCTTATCTTGAATCTTAGCCTTGACATTGTCGATGGTATCGGAGCTCTCA 1704 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||||||||| || | ||||| | || |||||||| Sbjct 1703 ACCTCCAGAGTGATGGTTTTACCGGTAAGAGTTTTTACAAAAATCTGCAT 1654 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| || | || | ||| | |||| |||||| || || |||||| Sbjct 1655 ATGCCCCCACGAAGGCGGAGGACAAGATGAAGTGTAGACTCTTTCTGGATGTTGTAATCT 1596 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | ||| || |||||||| || | ||||| || ||||| Sbjct 1595 GCAAGGGTTCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGGA 1536 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || ||| || |||||| || ||||| || ||| Sbjct 1535 GGAATTCCTTCCTTGTCTTGAATCTTAGCCTTAACATTATCGATGGTATCAGAGCTCTCT 1476 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||||||||| | || |||| || |||||||| Sbjct 1475 ACCTCGAGAGTGATAGTTTTACCAGTGAGGGTCTTAACAAAGATCTGCAT 1426 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || ||||| | || | ||| | || | ||||| || || |||||| Sbjct 2567 ATTCCACCCCTCAGTCGCAGCACAAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCT 2508 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | | || || | |||||||||||| || || ||||| || ||||| || Sbjct 2507 GCAAGTGTCCTTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTGCTGGTCTGGA 2448 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || ||||| || ||||| ||| |||||||| ||| Sbjct 2447 GGGATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTGTCTATTGTATCTGAGCTTTCA 2388 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || ||||| || || ||||| | || || | || ||||||||| Sbjct 2387 ACTTCCAGTGTAATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCATT 2337 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| |||||| ||||| ||||||| | || || | || || | ||| || ||| Sbjct 2078 GTAGACTCTTTCTGGATATTGTAATCTGCAAGAGTCCGGCCATCTTCAAGTTGCTTTCCA 2019 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| |||| ||||| || || || || |||||||| |||||||| || || || Sbjct 2018 GCAAAGATTAGCCTCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCCTTG 1959 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 | |||| || ||||| || | ||| || || || || |||||||||||||| | || Sbjct 1958 AGATTATCGATGGTATCAGAGGTTTCAACCTCGAGCGTTATGGTTTTACCAGTAAGAGTC 1899 Query 172053 TTAATGAATATCTGCAT 172069 || | || || ||||| Sbjct 1898 TTCACAAAGATTTGCAT 1882 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||||| | || ||| | || || | || || ||||||||||| | | Sbjct 2975 ATATTGTAATCTGCCAGAGTGCGTCCATCTTCAAGCTGCTTCCCAGCAAAAATGAGGCGT 2916 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || ||||| || ||||| || ||||| ||||| || |||||| || ||| Sbjct 2915 TGTTGATCCGGTGGGATCCCTTCCTTGTCTTGAATTTTTGCCTTCACATTATCAATTGTA 2856 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| || || || | ||| || ||||| ||||| || ||||| | ||||| ||| Sbjct 2855 TCTGAGCTCTCAACCTCCAAAGTGATTGTTTTCCCAGTCAAAGTTTTGACAAATATTTGC 2796 Query 172068 AT 172069 || Sbjct 2795 AT 2794 >seq693518 Length=857 Score = 105 bits (116), Expect = 1e-17 Identities = 134/183 (73%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | || | || | || |||||||| || ||||| ||||| |||||| Sbjct 703 ATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAATTGCTTGCCAGCGAAAATCAATCTC 644 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT-TATAGT 172006 ||||| || || || || ||||| |||||||| ||||| ||||| || || || | Sbjct 643 TGTTGATCGGGAGGGATACCTTCCTTATCTTGAATTTTGGCTTTTAACTTTGTCAATCAT 584 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || |||| || ||||| || || ||||| || |||| || || | || ||||| Sbjct 583 ATCAGAGCATTCAACCTCTAGGGTGATCGTTTTGCCGGTTAGGGTCTTGACAAAGATCTG 524 Query 172067 CAT 172069 ||| Sbjct 523 CAT 521 >seq659339 Length=4894 Score = 93.3 bits (102), Expect = 8e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 171844 CACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATA 171903 |||| | ||| || | || | ||| | ||| | || || ||| |||||||||| | Sbjct 288 CACCACGAAGGCGAAGAACCAGATGCAGAGTGGAGTCCTTTTGAATTTTATAATCTGCAA 229 Query 171904 AAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTA 171963 || |||| |||| || | || || |||||||| || | |||| ||| || ||||| | Sbjct 228 GAGTTCGTCCGTCCTCAAGCTGCTTGCCAGCAAATATCAGCCTCTATTGATCTGGTGGGA 169 Query 171964 TTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTT 172023 | ||||| || || | || ||| |||||| || || || || | || | Sbjct 168 TGTACTCTTTGTCCTGAACCTTTGCTTTGACATTATCAATTGTGTCAGAGCTCCCCACCT 109 Query 172024 CTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||||||||||||||||| || ||| |||| | ||||||||||| Sbjct 108 CCAGAGTAATGGTTTTACCGGTCAATATTTTCACAAATATCTGCAT 63 >seq603803 Length=4421 Score = 89.7 bits (98), Expect = 9e-13 Identities = 144/206 (70%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 171864 AAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAAT 171923 |||| ||||| | ||| || ||| || |||| || |||| | | | || |||||| Sbjct 4097 AAATACAAAGTGGACTCCTTTTGAATGTTGTAATTTGCCAAAGTCCCTCCATCTTCCAAT 4038 Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||| || ||||| || | ||||| || || | ||| |||| ||| | |||| || Sbjct 4037 TGTTCGCCTGCAAAGATAAGCCTCTGCTGATCCGATGGAATTCTTTCCGTGTCTTAAATC 3978 Query 171984 TTATTTTTTACATTAGTTA-TAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 172042 || ||||||||| | | | || || || || ||||| || |||| |||||||| Sbjct 3977 TTGGCTTTTACATTTATCAATGGTGTCGGAGCTCTCAACTTCCAGCATAATTGTTTTACC 3918 Query 172043 AGTTAATGTTTTAATGAATATCTGCA 172068 ||||| ||||| | ||| ||||||| Sbjct 3917 AGTTAGGGTTTTGACGAAAATCTGCA 3892 >seq167167 Length=426 Score = 89.7 bits (98), Expect = 9e-13 Identities = 125/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | || | || | || |||||||| || ||||| ||||| |||||| Sbjct 317 ATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAATTGCTTGCCAGCGAAAATCAATCTC 258 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT-TATAGT 172006 ||||| || || || || ||||| |||||||| ||||| ||||| | || || || Sbjct 257 TGTTGATCGGGAGGGATACCTTCCTTATCTTGAATTTTGGCTTTTATTGTTGTCAATCGT 198 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 || || |||| || ||||| || || ||||| || ||| || || | ||| Sbjct 197 ATTAGAGCATTCAACCTCTAGGGTGATCGTTTTGCCGATTAGGGTCTTGACGAA 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896149266710400