Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq784841 441 8e-119 seq585748 417 9e-112 seq585752 289 3e-73 seq492030 286 4e-72 seq585461 215 6e-51 >seq784841 Length=3474 Score = 441 bits (488), Expect = 8e-119 Identities = 692/985 (70%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| ||| || || || | ||| |||| ||| ||||||| || Sbjct 2998 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGGTTGGTGTTTTG 2939 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| | ||| | || || || || || ||| | || ||||| | |||||| Sbjct 2938 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGTTGCTCC 2880 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413 |||||| ||||| || || || | ||||| ||| | || ||| | | ||||| ||| | Sbjct 2879 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACGA 2820 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 || ||||| ||||| | |||| |||| || || || || || || || || || Sbjct 2819 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAAT 2760 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 |||||||||| | | | || |||||||| || ||| | |||||||| | || || | Sbjct 2759 CTGGGAAGCAACATCCGTTGATGAGTGGTTATACAACTGTGGTCCTTATGAACTAATTGT 2700 Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 | | |||||| | |||| | || ||||||||| | |||||||| | | | | Sbjct 2699 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAAATTAGTTTCCG 2640 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653 || || ||| |||||||||| | | ||||| | | | ||||| | || || | || Sbjct 2639 TCTGGGTATGCGACCTTGGATTGCTTTTGCATATTTAACTCCTGTTGCAGCTGCTATCGC 2580 Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713 || ||| | | || ||| | ||||| || || |||||||||||||| ||||| || Sbjct 2579 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 2520 Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773 || ||||| |||||||| ||| | || |||||||| || |||||||| || |||||||| Sbjct 2519 TTCTGGTACTTTCAACTTTATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 2460 Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 72833 || || ||| ||| ||||| ||| | ||||| || || |||| ||| ||||| || Sbjct 2459 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAATGCTATGCATGG 2400 Query 72834 TTCACTTGTTA-CTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACG 72892 ||| |||| || |||| | | ||||| || || ||||| || || | || | | Sbjct 2399 TTC-CTTGATAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTACTAATGAAG 2341 Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 72952 | || || || || ||||| |||||||| ||||| ||||| || |||||||| || || | Sbjct 2340 GTTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTG 2281 Query 72953 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 73012 | || | || ||||| ||| | || ||||||||||||||||||||||||||| | | Sbjct 2280 GCCGACTGATATTCCAATATACTAGTTTTAACAACTCTCGTTCATTACACTTCTTCTTAG 2221 Query 73013 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCA 73072 ||| | |||||||| || | ||||| || | | ||||| | || ||||| |||| Sbjct 2220 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 2161 Query 73073 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 73132 || | ||||| ||||| ||| ||||||| || || ||| | || | | | Sbjct 2160 ACTTAAACGGTTTCAATTTCTACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATA 2101 Query 73133 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 73192 | |||| ||| | | || | || |||||||| ||||||||||||||||| | |||| Sbjct 2100 CTTGGGCTGATATCATCAATCGTGCTAACCTTGGTCTGGAAGTTATGCATGAACGTAATG 2041 Query 73193 CACACAACTTCCCACTAGACCTAGC 73217 | || |||||||| || || |||| Sbjct 2040 CTCATAACTTCCCTCTGGATTTAGC 2016 >seq585748 Length=906 Score = 417 bits (462), Expect = 9e-112 Identities = 600/839 (72%), Gaps = 10/839 (1%) Strand=Plus/Minus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-A 72313 ||| || || || | ||| |||| ||||||||||| || |||||||| | ||| | | Sbjct 835 CACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGA 777 Query 72314 CTGCTGCTGCTTGT-TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGA 72372 | || || |||| || ||| | || ||||| ||||||||||||| ||||| || || Sbjct 776 CCGCAACTT-TTGTATTTATTATTGCTTTCATTACTGCTCCTCCAGTGGATATTGATGGT 718 Query 72373 ATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTA 72432 || | ||||| ||| | || ||| | | || || ||||| || ||||| ||||| | Sbjct 717 ATTCGTGAACCTGTTTCTGGGTCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATT 658 Query 72433 GTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATG 72492 |||| |||| ||||| | || || || || || |||||||||||||| | | Sbjct 657 ATTCCTACTTCTGCAGCAATCGATTTGCATTTTTACCCAATCTGGGAAGCAGCATCCGTT 598 Query 72493 GACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGA 72552 || |||||||| || ||||| |||||||| | || || || | ||| || | |||| Sbjct 597 GATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACATCTTACTTGGT 538 Query 72553 ATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGG 72612 | || ||||||||| | |||||||||| | | | || || ||| |||||||| Sbjct 537 GTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGG 478 Query 72613 ATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTT---GCAGTATTCCTTGTGTAT 72669 || ||| ||||| ||||| ||||| |||||| || || || ||| | | || Sbjct 477 ATTGCTGTTGCATATTCAGCTCCTGT---TGCAGCTGTTACTGCTGTTTTCTTGATCTAC 421 Query 72670 CCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAAC 72729 ||| ||||||| || || |||||||||||||| ||||| || || ||||| |||||| Sbjct 420 CCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAAC 361 Query 72730 TTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGT 72789 || ||| | || ||||| || || |||||||| || |||||||| || || ||| ||| Sbjct 360 TTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGC 301 Query 72790 GTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCA 72849 ||||| ||| | ||||| || || |||||| | ||||| ||||| | || | ||| Sbjct 300 GTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTTCTATGCATGGTTCCTTGGTAAGTTCT 241 Query 72850 TCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAA 72909 | | ||||| || || ||||| || || || | || || || || || ||| Sbjct 240 AGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAA 181 Query 72910 GAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAG 72969 || |||||||| ||||| ||||| || |||||||| || || || || | |||||||| Sbjct 180 GAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCAA 121 Query 72970 TATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTC 73029 | ||| |||||||||||||||||||||||||||||||| |||| | |||||||| Sbjct 120 TTTGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTG 61 Query 73030 TGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAA 73088 || | | ||| || | | ||||| | || ||||| |||||| | ||||| ||||| Sbjct 60 GGTATCTAGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAA 2 >seq585752 Length=1498 Score = 289 bits (320), Expect = 3e-73 Identities = 462/658 (70%), Gaps = 5/658 (1%) Strand=Plus/Minus Query 72562 TACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTA 72621 ||||||||| |||||||||| | | || || ||| || ||||||| ||| Sbjct 1471 TACATGGGTCATGAGTGGGAACTTAGTTTCCTTCTGGGTATGCGATCTTGGATTGTTGTT 1412 Query 72622 GCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAG 72681 ||||| ||||| | || | || || | || ||| | | || | ||||||| Sbjct 1411 GCATATTCAGCTCTTGCTACAGCTGCTACCGTTGTTTTCTTAATCTACCAGATCGGTCAA 1352 Query 72682 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTG 72741 || || |||||||||||||| ||||| || || ||||| |||||||| ||| | || Sbjct 1351 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATGATTGTA 1292 Query 72742 TTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATG 72801 ||||| || | |||||||| || |||||||| || || ||| ||||||||| ||| | Sbjct 1291 TTCCAGGCTAAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 1232 Query 72802 TTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGA 72861 ||||| || | |||| ||| ||| | ||||| |||| ||||| | | || || Sbjct 1231 TTCGGCGGCTCCTTATTCAATGCTATGAATGGTTCCTTTGTAACTTCTAGTTTGATTAGG 1172 Query 72862 GAGACAACAGAGAACGAGAGTCAAAACT-ACGGCTATAAGTTCGGACAAGAAGAAGAAAC 72920 || || ||||| || || | || | | | || || || | || ||||| |||||||| Sbjct 1171 GAAACCACAGAAAATGA-ATCCACTAGTGAAGGTTACAAATGTGGTCAAGAGGAAGAAAC 1113 Query 72921 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 72980 ||||| ||||| || |||||||| || || ||| || | |||||||| ||| | || Sbjct 1112 TTATAATATTGTAGCCGCTCATGGTTATTTTGGTCGACTGATCTTCCAATATACTAGTTT 1053 Query 72981 CAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTT 73040 |||||||||||||||||||||||||||||| ||| | |||||| | |||| | ||| Sbjct 1052 CAACAACTCTCGTTCATTACACTTCTTCCTAGCTTCTTGGCCTGTACTAGGTGTCTAGTT 993 Query 73041 AACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATC 73100 || | | ||||| || |||| |||||| | |||| ||||| ||||||||||| Sbjct 992 CACTACTTTAGGTATTACAACTATGGTTTTCAACTTAAACGATTTCAATTTCAACCAATC 933 Query 73101 AGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAA 73159 | || ||| || || | | | | || | || ||| | | || | || | Sbjct 932 TATAGTTGATAGCCAA--GGCCGTTAATTAATACTTAGGCTGATATCATCAATCGTGCTA 875 Query 73160 ACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 73217 ||||||| ||||||||||||||||||| |||| || |||||||| ||||| |||| Sbjct 874 ACCTTGGTATGGAAGTTATGCATGAAACTCATGCTCATAACTTCCCTCTAGATTTAGC 817 >seq492030 Length=881 Score = 286 bits (316), Expect = 4e-72 Identities = 328/441 (74%), Gaps = 0/441 (0%) Strand=Plus/Plus Query 72670 CCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAAC 72729 ||| ||||||| || || |||||||||||||| ||||| || || ||||| |||||| Sbjct 395 CCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAAC 454 Query 72730 TTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGT 72789 || ||| | || ||| | || || |||||||| || |||||||| || || ||| ||| Sbjct 455 TTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGC 514 Query 72790 GTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCA 72849 ||||| ||| | ||||| || || |||||||| ||||| | ||| | || ||||| Sbjct 515 GTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGATTCCTTGGTAACTTCT 574 Query 72850 TCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAA 72909 | | ||||| || || ||||| || || || | || || || || || ||| Sbjct 575 AGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAA 634 Query 72910 GAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAG 72969 || |||||||| ||||| ||||| || |||||||| || || || || | |||||||| Sbjct 635 GAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCAA 694 Query 72970 TATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTC 73029 ||||| |||||||||||||||||||||||||||||||| |||| | |||||||| Sbjct 695 TATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTG 754 Query 73030 TGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAAC 73089 || | ||||| || | | ||||| | || ||||| |||||| | ||||| ||||| Sbjct 755 GGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCCTTCAACTTAAACGGTTTCAAT 814 Query 73090 TTCAACCAATCAGTTGTAGAT 73110 ||||||||||| || || ||| Sbjct 815 TTCAACCAATCTGTAGTTGAT 835 >seq585461 Length=917 Score = 215 bits (238), Expect = 6e-51 Identities = 398/584 (68%), Gaps = 21/584 (4%) Strand=Plus/Minus Query 73818 GTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATAC 73877 |||||||||| |||||| || ||||| ||||| || ||||| | || | || | | Sbjct 916 GTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTTC 857 Query 73878 AGGGTTTCCACAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTG 73937 | || || || ||| ||||| || ||||||||||||||||| || || ||| || | | Sbjct 856 AAGGATTTCATAATTGGACTCTGAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGG 797 Query 73938 GTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACA 73997 | | || ||||||||||| || |||||||| || ||| | || || || | |||||| Sbjct 796 GGGCTGCTTTACTATGTGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGA-- 739 Query 73998 CATCACAATACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACAC 74057 || | | | ||| |||| ||| | || || | || || | Sbjct 738 -------------TG--GTGATGGCGCAA-ATACA---TTCCGTGCTTTTAACCCAACTC 698 Query 74058 AGGAAGAAGAGACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTA 74117 | | ||||| |||||| ||| | || |||||| | || ||||| || || ||||| Sbjct 697 AAGCTGAAGAAACTTATTCCATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGG 638 Query 74118 TAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTA 74177 | || ||||| || | | | | ||||| ||| ||||||| || ||||| || | ||| Sbjct 637 TTGCTTTTTCCAATACACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 578 Query 74178 TGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTG 74237 | |||| || | || | || ||| | || || ||||| | || || ||||| | Sbjct 577 TATGGATGAGTGCTCTTGGATTAGTCGGTTTGGCCCTGAACCTACGTGCCTATGACTTCG 518 Query 74238 TATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACA 74297 | |||||||| || | || || ||||| || || ||||| || |||||||| || || | Sbjct 517 TTTCTCAAGAAATTCGTGCCGCGGAAGATCCGGAATTTGAGACTTTCTACACAAAAAAAA 458 Query 74298 TTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACT 74357 |||| | || |||||||| | || |||||| | || ||||| || ||||| ||| Sbjct 457 TTCTATTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACC 398 Query 74358 TTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 74401 |||| ||||| || || | | ||||| || ||||| || ||| Sbjct 397 TTGTATTCCCTGAGGAGCTTCTACCACGTGGAAACGCTCTTTAA 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567185767175040