Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq677466 255 7e-62 seq611863 241 2e-57 seq794097 210 3e-48 seq562967 93.3 5e-13 >seq677466 Length=8805 Score = 255 bits (282), Expect = 7e-62 Identities = 235/295 (80%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||||||||| ||||||||||| ||||| | |||| | || ||| Sbjct 7910 GAGTGGATATTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGGGCCTCAGAGACCTGG 7969 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| |||||||| || |||||| |||||||| ||| ||||||||| Sbjct 7970 ACCTCCTTCATGAAACGGCCGGCGAGATTCTCGAGAACGATGCCATCGGAGGCGGCGAAG 8029 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||||||||| ||||||||||||||| |||| || |||||||| Sbjct 8030 AAGGCGAGGACGTGCTTGATGAAGTGGCGCTCGTCGGGAGTGAGGGAGTCCCAGTGGCGA 8089 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | || | | || ||||||||||||||||||| ||||||||||| || |||||| Sbjct 8090 ATATCCTGGGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCTTTCTTGTAC 8149 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTG 869926 |||||||| | ||| |||| |||||||||| | ||| ||||||| ||||||| Sbjct 8150 ATCTCCCAGATTTGAGGGTACTGGATAGGGAACA-TACAGAAGCGGTCGGGGTTG 8203 >seq611863 Length=950 Score = 241 bits (266), Expect = 2e-57 Identities = 232/295 (79%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||||||||| ||||||||||| ||||| | |||| | || ||| Sbjct 896 GAGTGGATATTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGGGCCTCAGAGACCTGG 837 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| |||| ||| || |||||| |||||||| ||| ||||||||| Sbjct 836 ACCTCCTTCATGAAACGGCAGGCGAGATTCTCGAGAACGATGCCATCGGAGGCGGCGAAG 777 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||||||||| ||||||||||||||| |||| || |||||||| Sbjct 776 AAGGCGAGGACGTGCTTGATGAAGTGGCGCTCGTCGGGAGTGAGGGAGTCCCAGTGGCGA 717 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | || | | || ||||||||||||||||||| |||||||||| || |||||| Sbjct 716 ATATCCTGGGACAAATCGACCTCCTCGGCGGTCCAGAAGAAGGCCTCGGCTTTCTTGTAC 657 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTG 869926 |||||||| | ||| |||| | ||||||||| | ||| ||| ||| ||||||| Sbjct 656 ATCTCCCAGATTTGAGGGTACCCGATAGGGAACA-TACAGAAGAGGTCGGGGTTG 603 >seq794097 Length=14469 Score = 210 bits (232), Expect = 3e-48 Identities = 225/295 (76%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||||||||| |||||||||||||| ||||| | |||| | || ||| Sbjct 12291 GAGTGGATGTTCTCGATGGCAATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGACCTGG 12350 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||| ||| |||| || |||||| |||||||||||| |||||||| Sbjct 12351 ACCTCGTTCATGAAGCGGGCGGCAAGATTCTCGAGGACGATGCCGTCGGAAGCGGCGAAG 12410 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||||||||| || || |||| | | ||| || |||||||| | Sbjct 12411 AAGGCGAGGACGTGCTTGATGAAATGCTTCTCGGAGGGGAGGAGGGAGTCCCAGTGGGAG 12470 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| | | || || || ||||| ||||||| ||||||| |||||| |||||| Sbjct 12471 AGGTCCTGGGCCAAATCGACTTCGTCGGCAGTCCAGAAGGAGGCCTGGGCCTTCTTGTAC 12530 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTG 869926 || ||||| | |||| ||||| | |||||||| | ||| ||||||| |||| || Sbjct 12531 ATTTCCCAAATTTGCGGGTAGAGAATAGGGAACA-TACAGAAGCGGTCGGGGGTG 12584 Score = 125 bits (138), Expect = 9e-23 Identities = 192/274 (70%), Gaps = 6/274 (2%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| |||| || || || |||| ||||||| || | | |||||||| | ||| Sbjct 12006 TGCAAACCCTCATCCCGCGATATCAATTCGTTGGAGAACGTCAACCCGGGCATCAACCCG 12065 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 |||||||| ||||| || || |||||||| || || ||||| || || ||||| ||| | Sbjct 12066 CGCTTCTTAAGCCAGAATATTGCGCAGAAGCTTCCGGAGAAGAATATCCCCTCCACGCAG 12125 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353 || ||| ||| || ||||||| |||| ||| ||| | ||||| || Sbjct 12126 GCGAAGGCGAGCAGACGCTCGGTGAAGGATTCGGAACCC------TGAATCCAGCGCAGG 12179 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413 ||||| | |||||| ||| || | || | |||| ||||||||| ||||| | || Sbjct 12180 GCCCAATTGGCCTTGTTCTGGACGCAGGGAATGGTGTGGATGGCGCGGAAGAGCATGGCC 12239 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCA 869447 || ||||| | ||||||| |||||| ||||||| Sbjct 12240 TTCTCGGCAGAATCCTTGATATAGGTCTCGATCA 12273 >seq562967 Length=12847 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| |||| || ||||| ||| || | |||||| || Sbjct 7596 GCGGCTAACTACCTGAACATCAAGTCTCTTCTGGATCTGACTTGCCAGACGGTGGCCGAC 7537 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| || | || ||||| || || |||||||| ||||||||| Sbjct 7536 ATGATCAAGGGGAAAACTCCAGAGGAAATTCGGAAGACCTTCAACATCAAG 7486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6041956207069296