Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq621678 113 4e-20 seq5020 105 5e-18 seq690132 98.7 8e-16 seq564810 95.1 1e-14 seq500796 95.1 1e-14 seq731700 89.7 4e-13 seq502676 89.7 4e-13 seq382206 87.8 1e-12 seq716612 86.0 5e-12 seq564812 86.0 5e-12 >seq621678 Length=9740 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||| |||| |||||||| |||| | ||| ||| | Sbjct 763 ATGCAGATTTTCGTCAAAACCCTAACTGGCAAAACAGTTACGCTGGAAGTTGAGAGCTCC 704 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | |||||| || ||| ||||||||||| | || |||||| Sbjct 703 GACACAATTGATAACGTAAAAGCCAAAATTCAGGACAAAGAAGGAATTCCACCGGATCAG 644 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || ||||| |||| |||| || || |||||||||||||| Sbjct 643 CAGAGGCTTATCTTTGCAGGCAAACAATTGGAAGATGGAAGGACTTTGGCGGATTACAAC 584 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || || ||||| |||| |||| ||||| || || Sbjct 583 ATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAGGCTGCGCGGTGG 537 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG---CCT 110329 ||||| |||||||| ||||| || || || ||||||||||| | || |||| || Sbjct 535 ATGCAGATATTTGTGAAAACATTGACTGGAAAAACCATTACTCTGGAGGTGGAGAGCTCT 476 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | || ||| |||||| |||||||| ||| | || ||| Sbjct 475 GAC---ACTATTGATAATGTCAAAGCAAAGATTCAGGACAAAGAGGGCATCCCACCAGAT 419 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| || || || | |||||| || ||||| ||||||| |||| | || |||||| Sbjct 418 CAACAGAGGCTGATATTTGCGGGCAAGCAGCTCGAGGATGGACGAACCCTTGCTGATTAC 359 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| ||||||| || || || |||| |||| Sbjct 358 AACGTTCAAAAGGAGTCCACTCTGCATTTGGT 327 >seq5020 Length=1186 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 |||||| || || |||||||| |||||||||||||||| || ||||| || | || Sbjct 810 AATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACCATCACTCTCGAAGTCGAAAGCTC 869 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||| || ||| | | || || |||||| ||||| ||||| | || ||||| Sbjct 870 -CGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATCCCTCCGGATC 928 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || | || || | ||| || || ||||||||||| | ||| || | |||||||||| Sbjct 929 AGCAGCGCCTCATCTTTGCCGGGAAGCAGCTGGAGGACGGCAGGACTTTAGCGGATTACA 988 Query 110451 ACATTCAAAAAGAATCTACGTTGCA 110475 ||||||| || ||||| || |||| Sbjct 989 ACATTCAGAAGGAATCAACACTGCA 1013 >seq690132 Length=1697 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||||||| ||| |||||||| ||||| | ||| ||| | Sbjct 835 ATGCAGATTTTCGTCAAAACTCTAATTGGCAAAACAATTACGCTGGAAGTTGAGAGCTCC 894 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | |||||| || ||| ||||||||||| | || | |||| Sbjct 895 GACACAATTGATAATGTAAAAGCCAAAATTCAGGACAAAGAAGGGATTCCACCGAATCAG 954 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || ||||| |||| | || | ||| |||||||||||| | Sbjct 955 CAGAGGCTCATCTGTGCAGGCAAACAATTGGAAGTTGAAAAAACTTTGGCGGATTACAGC 1014 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || || ||||| |||| |||| ||||| || || Sbjct 1015 ATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAGGCTGCGCGGTGG 1061 >seq564810 Length=1937 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||||||| |||| ||| |||| ||||| | ||| ||| | Sbjct 488 ATGCAGATTTTCGTCAAAACTCTAACTGGCCAAACAATTACGCTGGAAGGTGAGAGCTCC 547 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | |||||| || |||| ||||||||||| | || |||||| Sbjct 548 GACACAATTGATAACGTAAAAGCCAAAATTGAGGACAAAGAAGGGATTCCACCGGATCAG 607 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || ||| | |||| | || || || |||||| ||||||| Sbjct 608 CAGAGGCTCATCTTTGCAGGCAAATAATTGGAAGTTGGAAGGACTTTGGCGGGTTACAAC 667 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAG 110487 |||||||| || || || ||||| |||| |||| Sbjct 668 ATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAG 702 >seq500796 Length=7474 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| |||||| | ||||| |||||||| || | || ||| | Sbjct 1654 ATGCAGATTTTTGTAAAAACTCTTACCGGTAAAACCATCACTCTGGAGGTTGAGAGCTCC 1713 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || |||||| || || ||||| | || ||||| Sbjct 1714 GATACCATCGACAATGTCAAGGCTAAGATTCAAGATAAGGAAGGGATTCCTCCAGATCAG 1773 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||||| ||| || || || || || |||| ||||| | || |||||||| Sbjct 1774 CAGAGGCTTATTTTTGCTGGAAAGCAACTTGAAGATGGTAGAACTCTTGCAGATTACAAT 1833 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||||||||||||||| Sbjct 1834 ATTCAAAAAGAATCTAC 1850 >seq731700 Length=3081 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | |||||||| ||||| ||| |||| |||| | Sbjct 1147 ATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGAGCTCC 1206 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || |||||| ||||| ||||| | ||| || || Sbjct 1207 GATACAATCGACAACGTTAAGTCTAAGATTCAGGACAAGGAAGGGATTCCCCCAGACCAG 1266 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | || || |||||||| ||||||| | | || | || ||||||||| Sbjct 1267 CAAAGGCTCATCTTCGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCGCTGATTACAAC 1326 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || ||||| || Sbjct 1327 ATTCAGAAGGAATCCAC 1343 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 |||||| || ||||||||||| | || || || ||||||||| | || ||| || Sbjct 1374 AATGCAGATCTTTGTCAAAACCCTCACAGGGAAGACCATTACCCTTGAGGTGGAAAGCTC 1433 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | ||||| | | | | || ||| ||||| ||||| || || | || ||| | Sbjct 1434 A-GATACAATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACC 1492 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| || || || | || || |||||||| ||||||| | | || | || ||||||| Sbjct 1493 AACAGAGGCTGATCTTCGCTGGGAAACAGCTCGAGGATGGCCGTACCCTTGCTGATTACA 1552 Query 110451 ACATTCAAAAAGAATCTAC 110469 |||||||||| || || || Sbjct 1553 ACATTCAAAAGGAGTCCAC 1571 >seq502676 Length=6550 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||||||||| || | || || |||||||| || | ||| |||| | Sbjct 1305 ATGCAGATATTTGTCAAGACACTGACTGGAAAAACCATCACTCTTGAAGTGGAGAGTTCT 1364 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| ||||| || |||||||| | || |||||| Sbjct 1365 GACACAATTGATAATGTCAAAGCAAAGATACAGGATAAAGAAGGTATCCCACCCGATCAA 1424 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || || ||||| ||||||| | | || |||| ||||| ||| Sbjct 1425 CAGAGGCTTATATTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTGGCTGATTATAAC 1484 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||| || ||||| |||| |||| Sbjct 1485 ATCCAAAAGGAGTCTACTCTGCATCTGGT 1513 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||| | ||||||||||| || || | || ||| | Sbjct 849 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAAACGATCACTCTGGAGGTTGAGAGTTCT 908 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| || ||| ||||| ||||| | || ||||| Sbjct 909 GATACGATCGACAATGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 968 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | |||| || || ||||| |||||||||| ||||| | || ||||||||| Sbjct 969 CAGCGGTTGATTTTCGCTGGGAAACAACTGGAGGATGGTAGAACCCTAGCCGATTACAAC 1028 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || ||||| || Sbjct 1029 ATTCAGAAGGAATCGAC 1045 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||||||||| | ||||| ||||| ||||| | ||| ||| | Sbjct 1077 ATGCAGATTTTTGTCAAAACCCTGACCGGTAAAACAATTACTCTGGAAGTTGAGAGCTCC 1136 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || ||| |||||||||||| | || ||||| Sbjct 1137 GACACAATTGATAACGTGAAAGCCAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAG 1196 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || ||||| |||| || | || || |||| ||||||||| Sbjct 1197 CAGAGGCTGATATTTGCAGGCAAACAATTGGAAGACGGGAGGACTCTGGCAGATTACAAC 1256 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||| || || || ||||| | || | || ||||| || || Sbjct 1257 GTTCAAAAGGAGTCGACTTTGCATCTTGTCCTTAGGCTGCGTGGTGG 1303 >seq382206 Length=6817 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 |||||||||||| | || || || || || || || | ||| || |||||| ||||| Sbjct 2621 GACAAAGAAGGCATACCACCAGACCAGCAGAGGCTGATATTTGCTGGAAAACAGTTGGAG 2680 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| || ||| |||| |||||||| || || |||||||| ||| | ||| | || || Sbjct 2681 GATGGAAGGACATTGGCAGATTACAATATCCAGAAAGAATCAACGCTTCACCTTGTTTTG 2740 Query 110486 AGACTGCGAGGGGGAA 110501 ||||| | || |||| Sbjct 2741 AGACTCAGGGGAGGAA 2756 >seq716612 Length=894 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 110281 ATTTGTCAAAACT-TTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGACGATACT 110338 ||| ||||||||| ||||| |||||||| ||| | | ||| ||| ||| ||| || Sbjct 715 ATTCGTCAAAACTCTTAACTGGCAAAACAATTTCGCTGGAAGTTGAGAGCTG-CGAAACA 657 Query 110339 GTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGA 110398 | | | |||||| || ||| ||||||||||| | || | |||| || || Sbjct 656 ATTGATAATGTAAAAGCCAACATTCAGGACAAAGAAGGGATTCCACCGTATCAGCAGAGG 597 Query 110399 CTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAA 110458 || || ||||| || ||||| |||||| | || || ||| ||||||||||| |||| Sbjct 596 CTCATCTATGCAGGCAAACAATTGGAGGTTAGAAGGACTTTGGTGGATTACAACACTCAA 537 Query 110459 AAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGG 110496 || || || | ||||| || | |||| ||||| || Sbjct 536 AAGGAGTCCGCTTTGCATTTGTTCCTAAGGCTGCGCGG 499 >seq564812 Length=421 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||||||| | || ||| |||| ||||| | ||| ||| | Sbjct 39 ATGCAGATTTTCGTCAAAACTCTTACTGGCCAAACAATTACGCTGGAAGTTGAGAGCTCC 98 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | |||||| || |||| ||||||||||| | || |||||| Sbjct 99 GACACAATTGATAATGTAAAAGCCAAAATTGAGGACAAAGAAGGGATTCCACCGGATCAG 158 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || ||| | |||| | || || || ||||| ||||||| Sbjct 159 CAGAGGCTCATCTTTGCAGGCAAATAATTGGAAGTTGGAAGGACTTTGGCGTCTTACAAC 218 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAG 110487 |||||||| || || || ||||| |||| |||| Sbjct 219 ATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAG 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408845134367984