Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq677466 210 3e-48 seq611863 197 2e-44 seq794097 170 3e-36 seq514993 104 4e-16 seq665919 100 4e-15 >seq677466 Length=8805 Score = 210 bits (232), Expect = 3e-48 Identities = 196/249 (79%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||| | || ||||||||||||||||| |||||||| || ||||| |||||||| Sbjct 7954 GGCCTCAGAGACCTGGACCTCCTTCATGAAACGGCCGGCGAGATTCTCGAGAACGATGCC 8013 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 ||| ||||||||| |||||||||||||||||||| ||||| ||||||||| |||| Sbjct 8014 ATCGGAGGCGGCGAAGAAGGCGAGGACGTGCTTGATGAAGTGGCGCTCGTCGGGAGTGAG 8073 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 ||| |||||||| | || | | |||||||||||||||||||| |||||||| Sbjct 8074 GGAGTCCCAGTGGCGAATATCCTGGGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGC 8133 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 |||||| || |||||||||||||| || | |||| |||| ||||||| | ||||| Sbjct 8134 CTCGGCTTTCTTGTACATCTCCCAGATTTGAGGGTACTGGATAGGGAACATACAGAAGCG 8193 Query 796389 ATTGGGGTT 796397 | |||||| Sbjct 8194 GTCGGGGTT 8202 Score = 122 bits (134), Expect = 1e-21 Identities = 212/309 (69%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 794356 ATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 794415 ||||||||||| ||| | || ||||| | || |||||||| ||||| || || Sbjct 7646 ATCAATTCGTTTGAAAAAGTCAATCCAGGCATCAATCCACGCTTCTTCAGCCAGAAAATC 7705 Query 794416 GCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCG 794475 || ||||| || || |||||||| || ||||| || |||||| ||| | |||||| Sbjct 7706 GCGCAGAAGCTTCCAGAGAAAAAAATCCCCTCCACACAAGCAAAGGCGATTATCCGCTCA 7765 Query 794476 GCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTC 794535 ||||| | || ||| || |||||| | ||||| | ||||| Sbjct 7766 GCAAAGGATTCAGAGCCATC------GATCCAACGGAGGGCCCAATTGGCCTTGCGTTGG 7819 Query 794536 ACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACG 794595 || | || || || || || |||||||| ||| | ||| || | | ||||||| | Sbjct 7820 ACGCAAGGGACAGTATCAATTGCGCGAAAAAGGGAGCTCTTTTCTTCGGAATCCTTGATG 7879 Query 794596 TAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAG 794655 |||| |||| |||||| ||| |||| |||||||| || ||||||||||| |||||| Sbjct 7880 TAGGATTCGAGGAGGAGACTGTACATCTCGGAGTGGATATTCTCGATGGCGATTTGGAAG 7939 Query 794656 CCATAAAAG 794664 || || ||| Sbjct 7940 CCGTAGAAG 7948 >seq611863 Length=950 Score = 197 bits (218), Expect = 2e-44 Identities = 193/249 (78%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||| | || ||||||||||||||||| |||| ||| || ||||| |||||||| Sbjct 852 GGCCTCAGAGACCTGGACCTCCTTCATGAAACGGCAGGCGAGATTCTCGAGAACGATGCC 793 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 ||| ||||||||| |||||||||||||||||||| ||||| ||||||||| |||| Sbjct 792 ATCGGAGGCGGCGAAGAAGGCGAGGACGTGCTTGATGAAGTGGCGCTCGTCGGGAGTGAG 733 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 ||| |||||||| | || | | |||||||||||||||||||| ||| |||| Sbjct 732 GGAGTCCCAGTGGCGAATATCCTGGGACAAATCGACCTCCTCGGCGGTCCAGAAGAAGGC 673 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 |||||| || |||||||||||||| || | |||| | ||| ||||||| | ||| | Sbjct 672 CTCGGCTTTCTTGTACATCTCCCAGATTTGAGGGTACCCGATAGGGAACATACAGAAGAG 613 Query 796389 ATTGGGGTT 796397 | |||||| Sbjct 612 GTCGGGGTT 604 >seq794097 Length=14469 Score = 170 bits (188), Expect = 3e-36 Identities = 186/247 (75%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| || |||||||| |||||||||||| |||| || ||||| |||||||| Sbjct 12335 GGCCTCGGAGACCTGGACCTCGTTCATGAAGCGGGCGGCAAGATTCTCGAGGACGATGCC 12394 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| |||||||| |||||||||||||||||||| || || |||| | | ||| Sbjct 12395 GTCGGAAGCGGCGAAGAAGGCGAGGACGTGCTTGATGAAATGCTTCTCGGAGGGGAGGAG 12454 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 ||| |||||||| ||| | | | ||||| || ||||| ||||| |||||||| Sbjct 12455 GGAGTCCCAGTGGGAGAGGTCCTGGGCCAAATCGACTTCGTCGGCAGTCCAGAAGGAGGC 12514 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 || |||||| |||||||| ||||| || | ||||| | || ||||||| | ||||| Sbjct 12515 CTGGGCCTTCTTGTACATTTCCCAAATTTGCGGGTAGAGAATAGGGAACATACAGAAGCG 12574 Query 796389 ATTGGGG 796395 | |||| Sbjct 12575 GTCGGGG 12581 Score = 149 bits (164), Expect = 1e-29 Identities = 218/309 (71%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 794356 ATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 794415 |||||||||||| || | |||||||| | ||||||||||| ||||| || || Sbjct 12027 ATCAATTCGTTGGAGAACGTCAACCCGGGCATCAACCCGCGCTTCTTAAGCCAGAATATT 12086 Query 794416 GCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCG 794475 || ||||| || || ||||| || || ||||| ||| ||| ||| ||| || |||||| Sbjct 12087 GCGCAGAAGCTTCCGGAGAAGAATATCCCCTCCACGCAGGCGAAGGCGAGCAGACGCTCG 12146 Query 794476 GCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTC 794535 | || | || |||| ||||| || ||||| | ||||| ||| Sbjct 12147 GTGAAGGATTCGGAACCCTGA------ATCCAGCGCAGGGCCCAATTGGCCTTGTTCTGG 12200 Query 794536 ACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACG 794595 || |||| | |||| ||||||||| ||||| | |||||||| | | ||||||| Sbjct 12201 ACGCAGGGAATGGTGTGGATGGCGCGGAAGAGCATGGCCTTCTCGGCAGAATCCTTGATA 12260 Query 794596 TAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAG 794655 ||||| ||||| | || ||| |||| ||||||||||| |||||||| ||||||||| Sbjct 12261 TAGGTCTCGATCAAAAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCAATCTGGAAG 12320 Query 794656 CCATAAAAG 794664 || || ||| Sbjct 12321 CCGTAGAAG 12329 >seq514993 Length=2147 Score = 104 bits (114), Expect = 4e-16 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || || ||||||||||| || || || |||||| |||| | ||| || | | Sbjct 887 TGAACTTAGTTACAGCCTTGGTACCTTCGGAAACAGCGTGCTTGGCTAATTCTCCCGGAA 946 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||| ||||| || | | ||||| |||||| | Sbjct 947 GAACCAACCGAACCGCAGTCTGAATCTCCCGAGAGGTAATCGTCGGCTTCTTGTTGTACC 1006 Query 1485590 GCGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||||||| || | || | | | ||| || |||| |||||||||| || |||| Sbjct 1007 GCGCCAGTCGCGACGACTCCTGCGCCAAT-TTCTCGAAGATGTCGTTGATGAAGCTGTTC 1065 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| ||||| ||| | ||||| || | ||| ||||| |||||||| ||||||||| Sbjct 1066 ATGATCCCCATCGCCTTGCTCGAGATCCCGATGTCCGGGTGAACCTGCTTCAGCACCTTG 1125 Query 1485709 TAAA 1485712 ||| Sbjct 1126 AAAA 1129 >seq665919 Length=1643 Score = 100 bits (110), Expect = 4e-15 Identities = 159/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 || || || ||||| ||||| || ||||||||||| |||| | |||||| ||| | Sbjct 378 TTCGTCACTGCCTTCGTACCTTCAGAGACGGCGTGTTTGGCTAATTCGCCAGGCAACACG 437 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG---CGC 1485591 ||||||||||||||||||||||| || | | ||||| | |||| ||| || ||| Sbjct 438 AGGCGCACGGCGGTCTGGATCTCCCGCGAGGTGATCG---TCGGCTTCTTATTGTATCGC 494 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| || ||||| | ||| |||| || || |||| || |||||| Sbjct 495 GCCAGCCGCGACGCCTCCATCGCGAGTTTCTCGAATATATCATTGATGAAACTGTTCATA 554 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 ||| ||| | |||| |||| || || | || || |||||||| || Sbjct 555 ATCCCCATAGCTTTGCTGGATATTCCGATATCCGGATGCACCTGTTT 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7831754362692432