Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq588422 131 1e-25 seq731700 118 7e-22 seq361176 104 2e-17 seq621678 100 2e-16 seq502676 96.9 2e-15 seq384027 93.3 3e-14 seq500796 86.0 4e-12 >seq588422 Length=1254 Score = 131 bits (144), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| |||||||| ||||| ||||| | ||| |||| | || Sbjct 75 AGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCC 134 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| |||||||||||||| | ||||||||| | || | ||||||||||| Sbjct 135 TCGAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 194 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| | ||||||| || | |||||| |||| ||| || Sbjct 195 TGGATCTTAGCCTTGAC----GTTATCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGAT 250 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||||||||| || ||||||||||| Sbjct 251 CGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 286 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| |||||||| ||||||||||| | || |||| | || Sbjct 303 AGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTATAGTCGGCGAGCGTGCGGCCGTCC 362 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || |||||||| | |||||||| | || | || |||||||| Sbjct 363 TCGAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTCC 422 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | |||||| |||| ||| |||||| Sbjct 423 TGGATCTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTC 482 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || ||||||||||| Sbjct 483 TTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 514 >seq731700 Length=3081 Score = 118 bits (130), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 |||||||| || | ||| |||||||||||||| || || | ||| |||| |||| Sbjct 1358 AGGACCAGATGGAGAGTGGATTCCTTCTGAATGTTGTAATCAGCGAGGGTGCGGCCATCC 1299 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || ||||||||||| || | |||||||||| | || | ||| |||||||| Sbjct 1298 TCGAGCTGTTTGCCGGCGAAGATGAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTGTCC 1239 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATT-CATTGG---CCTCGACATCAACGGTTAT 34941 | || || || || | | |||||| || || ||| || || | ||| || Sbjct 1238 TGAATCTTAGACTTAAC----GTTGTCGATTGTATCGGAGCTCTCCACCTCGAGGGTGAT 1183 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||||||||| || ||||||||||| Sbjct 1182 GGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 1147 Score = 118 bits (130), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | || ||| || |||| ||| | |||| |||||||| ||||| ||||||| Sbjct 1829 CCACCACGCAGCCTAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGCC 1770 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | |||| |||| || || ||||| ||||| |||||||| | |||||||| | || Sbjct 1769 AATGTGCGGCCATCCTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 1710 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | |||||| ||||| | || || ||||| || |||| || ||| | ||| Sbjct 1709 ATCCCCTCTTTGTCCTGGATCTTAGCCTTGAC--AT--TATCAATGGTATCAGAGCTCTC 1654 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||| || ||||| || |||||||||||||||||||| ||||| Sbjct 1653 AACCTCCAGGGTAATAGTCTTCCCTGTGAGGGTCTTTACAAAGATTTGCAT 1603 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| || | |||| |||||| |||||||| || || | ||| | || |||| Sbjct 1587 CAGAACCAAATGGAGGGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTACGGCCATC 1528 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || || || ||||||||||| | || ||||| | || | ||||||||||| Sbjct 1527 CTCGAGCTGTTTCCCAGCGAAGATCAGCCTCTGTTGGTCCGGTGGGATTCCCTCCTTGTC 1468 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||| ||| | || | || | || || |||| ||| ||||| Sbjct 1467 CTGGATCTTGGCTTTAACGTTGTCAATTGTATCTGAGCTTTCCACCTCAAGGGTAATGGT 1408 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || |||||||| || |||||||||||||| Sbjct 1407 CTTCCCTGTGAGGGTTTTGACAAAGATCTGCAT 1375 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||||||||||| |||||| |||| ||| | || |||||||||||| ||||| |||| Sbjct 2287 TTCCTCCCCTCAGCCTCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATATTATAATCCG 2228 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | | |||| || || ||||| || || || ||||| | ||||||||| | | Sbjct 2227 CCAAGGTCCTGCCATCCTCTAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGGTCTGGTG 2168 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || || || | || | || ||| | Sbjct 2167 GGATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCCGAACTCTCCA 2108 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| || ||||| ||||| Sbjct 2107 CTTCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACGAAGATTTGCAT 2059 >seq361176 Length=4428 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| ||||| ||||| | || |||| |||| Sbjct 4243 AGGACGAGGTGTAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCC 4184 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||| || ||||| || ||||| || | || | || |||||||| Sbjct 4183 TCGAGCTGCTTTCCGGCAAAAATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCC 4124 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || || || || | ||| || ||| Sbjct 4123 TGGATCTTAGCCTTGACGTTGTCGATGGTATCGGAGGATTCAACCTCCAGGGTAATCGTC 4064 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| || || ||||||||||| Sbjct 4063 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 4032 >seq621678 Length=9740 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| || ||||| || | ||| |||| | || Sbjct 1008 AGGACGAGGTGGAGCGTGGACTCCTTCTGGATATTATAATCGGCGAGGGTGCGGCCGTCC 1067 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||| || || ||||| || | || | || |||||||| Sbjct 1068 TCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGTGGAATACCTTCCTTGTCT 1127 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTC-ATTGGC---CTCGACATCAACGGTTAT 34941 | || || |||||| |||| ||| || || |||||| || | ||||| Sbjct 1128 TGGATCTTGGCCTTGACGT----TATCAATTGTATCGGAGCTCTCGACTTCGAGAGTTAT 1183 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || |||||||| || || ||||||||||| Sbjct 1184 GGTTTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 1219 >seq502676 Length=6550 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| ||||| ||||||| || |||||||||||||| || || | |||| | | | Sbjct 1064 CCTGAGGACTAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAATCGGCTAGGGTTCTACC 1005 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| |||||||| || || ||||| |||| || ||||| || | || | || ||||| Sbjct 1004 ATCCTCCAGTTGTTTCCCAGCGAAAATCAACCGCTGCTGATCGGGAGGAATACCTTCCTT 945 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | ||||| |||||| | |||| ||| ||| || || | || || Sbjct 944 GTCTTGAATTTTGGCTTTGACATTGTCGATCGTATCAGAACTCTCAACCTCCAGAGTGAT 885 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || || ||||| |||||||||||||| Sbjct 884 CGTTTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 849 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| || ||||| || | ||| | || |||| Sbjct 604 AGGACGAGGTGGAGCGTGGACTCCTTCTGTATATTATAATCGGCGAGGGTCCGGCCATCC 545 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || ||||| || | || | || ||||| || Sbjct 544 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGAATACCTTCCTTATCC 485 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| |||| | || | |||||| || | || |||||| Sbjct 484 TGGATCTTGGCCTTGACATTATCTATGGTATCGGAGCTCTCGACTTCGAGAGTAATGGTC 425 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||| || || ||||||||||| Sbjct 424 TTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 393 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||||||| || ||||| |||| || | || | || Sbjct 832 AGAACGAGGTGAAGCGTGGACTCCTTCTGGATATTATAATCCGCCAGCGTCCGGCCGTCC 773 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||| || || || || || |||| | |||||||||||| Sbjct 772 TCTAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGATCCGGCGGAATCCCCTCCTTGTCT 713 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || ||| || || | || || ||| Sbjct 712 TGGATCTTCGCCTTAACGTTATCAATCGTATCCGAACTCTCAACCTCTAAAGTAATCGTC 653 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| ||||| || || ||||||||||| Sbjct 652 TTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 621 >seq384027 Length=1641 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | || ||||||||| ||||| ||||| | || ||||| |||| Sbjct 168 AGGACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGCCCATCC 109 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||| ||||| || |||||||| | || | || |||||||| Sbjct 108 TCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTC 50 >seq500796 Length=7474 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| || ||| ||||| ||||| || || | ||| | || |||| Sbjct 1637 AGGACAAGATGAAGTGTAGACTCTTTCTGGATGTTGTAATCTGCAAGGGTTCGGCCATCT 1578 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||| || | ||||| || | || | || |||||||| Sbjct 1577 TCAAGTTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCT 1518 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || ||||||| ||| | ||| || || | || || Sbjct 1517 TGAATCTTAGCCTTAAC--AT--TATCGATGGTATCAGAGCTCTCTACCTCGAGAGTGAT 1462 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||||||||| |||||||||||||| Sbjct 1461 AGTTTTACCAGTGAGGGTCTTAACAAAGATCTGCAT 1426 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/217 (69%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||| ||||| || || || || | || | || |||| Sbjct 2093 AGGACAAGGTGGAGTGTAGACTCTTTCTGGATATTGTAATCTGCAAGAGTCCGGCCATCT 2034 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||| || | ||||| ||| | || | || ||||| || Sbjct 2033 TCAAGTTGCTTTCCAGCAAAGATTAGCCTCTGCTGATCTGGAGGAATTCCTTCCTTATCT 1974 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || ||| |||| ||| ||||||| ||| || || || || | ||||| Sbjct 1973 TGAATCTTTGCCTTGA--GAT--TATCGATGGTATCAGAGGTTTCAACCTCGAGCGTTAT 1918 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || || || ||||| |||||||| |||||| Sbjct 1917 GGTTTTACCAGTAAGAGTCTTCACAAAGATTTGCATG 1881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322539968304272