Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq621678 111 1e-19 seq690132 107 2e-18 seq5020 105 5e-18 seq564810 102 6e-17 seq502676 95.1 1e-14 seq564812 93.3 3e-14 seq500796 89.7 4e-13 seq731700 86.0 5e-12 seq716612 82.4 6e-11 >seq621678 Length=9740 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| |||||||| |||| |||||||| |||| | ||| ||| ||| Sbjct 763 ATGCAGATTTTCGTCAAAACCCTAACTGGCAAAACAGTTACGCTGGAAGTTGAGAGCTC- 705 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | |||||| || ||| || |||||||| | || |||||| Sbjct 704 CGACACAATTGATAACGTAAAAGCCAAAATTCAGGACAAAGAAGGAATTCCACCGGATCA 645 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || ||||| |||| || | | || ||||||| ||||| Sbjct 644 GCAGAGGCTTATCTTTGCAGGCAAACAATTGGAAGATGGAAGGACTTTGGCGGATTACAA 585 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||||||| || ||||| |||| | || |||| || || Sbjct 584 CATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAGGCTGCGCGGTGG 537 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| || || || ||||||||||| | || |||| ||| Sbjct 535 ATGCAGATATTTGTGAAAACATTGACTGGAAAAACCATTACTCTGGAGGTGGAGAGCTCT 476 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || ||| ||||||| || ||||| ||| | || ||||| Sbjct 475 -GACACTATTGATAATGTCAAAGCAAAGATTCAGGACAAAGAGGGCATCCCACCAGATCA 417 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| || || | |||||| || ||||| ||||| | ||| | || || ||||| Sbjct 416 ACAGAGGCTGATATTTGCGGGCAAGCAGCTCGAGGATGGACGAACCCTTGCTGATTACAA 357 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 | ||||||||||||| || |||| |||| Sbjct 356 CGTTCAAAAGGAGTCCACTCTGCATTTGGT 327 >seq690132 Length=1697 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||||||| ||| |||||||| ||||| | ||| ||| ||| Sbjct 835 ATGCAGATTTTCGTCAAAACTCTAATTGGCAAAACAATTACGCTGGAAGTTGAGAGCTC- 893 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | |||||| || ||| || |||||||| | || | |||| Sbjct 894 CGACACAATTGATAATGTAAAAGCCAAAATTCAGGACAAAGAAGGGATTCCACCGAATCA 953 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || ||||| |||| | | ||||| ||||||| |||| Sbjct 954 GCAGAGGCTCATCTGTGCAGGCAAACAATTGGAAGTTGAAAAAACTTTGGCGGATTACAG 1013 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||||||| || ||||| |||| | || |||| || || Sbjct 1014 CATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAGGCTGCGCGGTGG 1061 >seq5020 Length=1186 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTG 107613 |||||| || || |||||||| |||| ||||||||||| || ||||| || | ||| Sbjct 810 AATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACCATCACTCTCGAAGTCGAAAGCTC 869 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| || ||| | | || || |||||| || || ||||| | || ||||| Sbjct 870 -CGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATCCCTCCGGATC 928 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||| | || || | ||| || || ||||||||||||| || || | ||||| |||| Sbjct 929 AGCAGCGCCTCATCTTTGCCGGGAAGCAGCTGGAGGACGGCAGGACTTTAGCGGATTACA 988 Query 107734 ACATTCAAAAGGAGTCTACGTTGCA 107758 ||||||| ||||| || || |||| Sbjct 989 ACATTCAGAAGGAATCAACACTGCA 1013 >seq564810 Length=1937 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||||||| |||| ||| |||| ||||| | ||| ||| ||| Sbjct 488 ATGCAGATTTTCGTCAAAACTCTAACTGGCCAAACAATTACGCTGGAAGGTGAGAGCTC- 546 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | |||||| || |||| || |||||||| | || |||||| Sbjct 547 CGACACAATTGATAACGTAAAAGCCAAAATTGAGGACAAAGAAGGGATTCCACCGGATCA 606 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || ||| | |||| | | | || |||||| ||||| Sbjct 607 GCAGAGGCTCATCTTTGCAGGCAAATAATTGGAAGTTGGAAGGACTTTGGCGGGTTACAA 666 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||||| || ||||| |||| Sbjct 667 CATTCAAAAGGAGTCCACTTTGCATTTGGT 696 >seq502676 Length=6550 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||||||||| | || || ||||| ||||| | ||| ||| ||| Sbjct 1077 ATGCAGATTTTTGTCAAAACCCTGACCGGTAAAACAATTACTCTGGAAGTTGAGAGCTC- 1135 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | || ||| || ||| || ||||||||| | || ||||| Sbjct 1136 CGACACAATTGATAACGTGAAAGCCAAAATTCAAGACAAAGAAGGCATTCCACCAGATCA 1195 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || ||||| |||| |||| | || |||| || ||||| Sbjct 1196 GCAGAGGCTGATATTTGCAGGCAAACAATTGGAAGACGGGAGGACTCTGGCAGATTACAA 1255 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 | ||||||||||||| || ||||| Sbjct 1256 CGTTCAAAAGGAGTCGACTTTGCA 1279 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || || |||||||| || | ||| |||| | Sbjct 1305 ATGCAGATATTTGTCAAGACACTGACTGGAAAAACCATCACTCTTGAAGTGGAGAGTTCT 1364 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| |||||| ||||||||||| | || ||||| Sbjct 1365 GACACAATTGATAATGTCAAAGCAAAGATACAGGATAAAGAAGGTATCCCACCCGATCAA 1424 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| || || ||||| ||||| | | || |||| || || ||| Sbjct 1425 CAGAGGCTTATATTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTGGCTGATTATAAC 1484 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||||||||| |||| |||| Sbjct 1485 ATCCAAAAGGAGTCTACTCTGCATCTGGT 1513 >seq564812 Length=421 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||||||| | || ||| |||| ||||| | ||| ||| ||| Sbjct 39 ATGCAGATTTTCGTCAAAACTCTTACTGGCCAAACAATTACGCTGGAAGTTGAGAGCTC- 97 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | |||||| || |||| || |||||||| | || |||||| Sbjct 98 CGACACAATTGATAATGTAAAAGCCAAAATTGAGGACAAAGAAGGGATTCCACCGGATCA 157 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || ||| | |||| | | | || ||||| ||||| Sbjct 158 GCAGAGGCTCATCTTTGCAGGCAAATAATTGGAAGTTGGAAGGACTTTGGCGTCTTACAA 217 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||||| || ||||| |||| Sbjct 218 CATTCAAAAGGAGTCCACTTTGCATTTGGT 247 >seq500796 Length=7474 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| |||||| | || || |||||||| || | || ||| ||| Sbjct 1654 ATGCAGATTTTTGTAAAAACTCTTACCGGTAAAACCATCACTCTGGAGGTTGAGAGCTC- 1712 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | | || || |||||| ||||| ||||| | || ||||| Sbjct 1713 CGATACCATCGACAATGTCAAGGCTAAGATTCAAGATAAGGAAGGGATTCCTCCAGATCA 1772 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||||| ||| || || || || || || | | ||| | || || ||||| Sbjct 1773 GCAGAGGCTTATTTTTGCTGGAAAGCAACTTGAAGATGGTAGAACTCTTGCAGATTACAA 1832 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||||| || ||||| Sbjct 1833 TATTCAAAAAGAATCTAC 1850 >seq731700 Length=3081 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| || | ||||| || ||||||||| | ||| |||| | Sbjct 1831 ATGCAAATTTTTGTCAAGACCCTGACAGGGAAGACCATTACCCTGGAAGTGGAGAGTTCG 1890 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| || || ||||| | || ||| ||| Sbjct 1891 GACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCACCGGACCAG 1950 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| ||||| | | || |||| ||||||||| Sbjct 1951 CAGAGGCTGATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCTTGGCTGACTACAAC 2010 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || ||||| || || | ||| |||| | || |||| || || Sbjct 2011 ATCCAGAAGGAATCCACCCTCCACTTGGTCCTTAGGCTGCGTGGTGG 2057 >seq716612 Length=894 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/196 (70%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 107565 TTTGTCAAAACT-TTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGGCGATACTG 107622 || ||||||||| ||||| |||||||| ||| | | ||| ||| |||| ||| || Sbjct 714 TTCGTCAAAACTCTTAACTGGCAAAACAATTTCGCTGGAAGTTGAGAGCTG-CGAAACAA 656 Query 107623 TCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGAC 107682 | | | |||||| || ||| || |||||||| | || | |||||||||| | Sbjct 655 TTGATAATGTAAAAGCCAACATTCAGGACAAAGAAGGGATTCCACCGTATCAGCAGAGGC 596 Query 107683 TTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAA 107742 | || ||||| || ||||| |||||| | || ||| ||| ||||||| ||||| Sbjct 595 TCATCTATGCAGGCAAACAATTGGAGGTTAGAAGGACTTTGGTGGATTACAACACTCAAA 536 Query 107743 AGGAGTCTACGTTGCA 107758 ||||||| | ||||| Sbjct 535 AGGAGTCCGCTTTGCA 520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395015519008432