Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq500796 105 1e-17 seq690132 100 4e-16 seq502676 100 4e-16 seq621678 96.9 5e-15 seq553100 95.1 2e-14 seq693518 86.0 1e-11 >seq500796 Length=7474 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| | || || ||||| || ||| | || || || || Sbjct 1655 TGCAGATTTTTGTAAAAACTCTTACCGGTAAAACCATCACTCTGGAGGTTGAGAGCTCCG 1714 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| || ||| || ||| ||| ||||| ||||| || ||||| | Sbjct 1715 ATACCATCGACAATGTCAAGGCTAAGATTCAAGATAAGGAAGGGATTCCTCCAGATCAGC 1774 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || || ||| | || ||| |||||| | ||||||| |||| Sbjct 1775 AGAGGCTTATTTTTGCTGGAAAGCAACTTGAAGATGGTAGAACTCTTGCAGATTACAATA 1834 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||||||||| || ||||| Sbjct 1835 TTCAAAAAGAATCTACCCTCCAT 1857 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||||||||| | ||||| || || || |||||||| ||| | || || || | | | Sbjct 2795 TGCAAATATTTGTCAAAACTTTGACTGGGAAAACAATCACTTTGGAGGTTGAGAGCTCA- 2853 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || ||||| ||| || ||||| || ||||| |||||| Sbjct 2854 GATACAATTGATAATGTGAAGGCAAAAATTCAAGACAAGGAAGGGATCCCACCGGATCAA 2913 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | ||||||||||| || || || | || ||| | || | ||||||| ||| Sbjct 2914 CAACGCCTCATTTTTGCTGGGAAGCAGCTTGAAGATGGACGCACTCTGGCAGATTACAAT 2973 Query 146211 ATACAAAAAGAATCGAC 146227 || || || || || || Sbjct 2974 ATCCAGAAGGAGTCCAC 2990 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| || | || || | || ||||||||||||||| | || || || | | | Sbjct 2111 TGCAAATTTTTGTGAAGACTCTTACTGGAAAAACAATTACTCTCGAGGTTGAGAGCTCA- 2169 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| ||| || || || ||| ||||| ||||| || || || Sbjct 2170 GATACCATTGACAATGTCAAAGCAAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCAG 2229 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||||| || ||||| || || ||| | || ||| | || | | ||||| ||| Sbjct 2230 CAGAGACTGATCTTTGCTGGGAAGCAACTTGAAGATGGCCGTACCCTTGCTGATTACAAT 2289 Query 146211 ATACAAAAAGAATCGACTATCCAT 146234 || ||||| ||||| || ||||| Sbjct 2290 ATCCAAAAGGAATCTACCCTCCAT 2313 >seq690132 Length=1697 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| ||| || ||||||||||| | || || || || Sbjct 836 TGCAGATTTTCGTCAAAACTCTAATTGGCAAAACAATTACGCTGGAAGTTGAGAGCTCCG 895 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||||||| ||||| || |||||||| |||||||| |||| | Sbjct 896 ACACAATTGATAATGTAAAAGCCAAAATTCAGGACAAAGAAGGGATTCCACCGAATCAGC 955 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| | |||||| |||||||| || | | | | ||| || | ||||| | | Sbjct 956 AGAGGCTCATCTGTGCAGGCAAACAATTGGAAGTTGAAAAAACTTTGGCGGATTACAGCA 1015 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || ||| | ||||| || Sbjct 1016 TTCAAAAGGAGTCCACTTTGCATTTGGT 1043 >seq502676 Length=6550 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || || |||||||||||| | || || || || Sbjct 1078 TGCAGATTTTTGTCAAAACCCTGACCGGTAAAACAATTACTCTGGAAGTTGAGAGCTCCG 1137 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || ||| ||||| ||| ||||||||||||||||| ||||| | Sbjct 1138 ACACAATTGATAACGTGAAAGCCAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAGC 1197 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || |||||||| |||||||| || || || || | ||||||| || Sbjct 1198 AGAGGCTGATATTTGCAGGCAAACAATTGGAAGACGGGAGGACTCTGGCAGATTACAACG 1257 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||| || |||||| | ||| Sbjct 1258 TTCAAAAGGAGTCGACTTTGCAT 1280 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || ||| | || |||||||| || ||| |||| || || | | Sbjct 1306 TGCAGATATTTGTCAAGACACTGACTGGAAAAACCATCACTCTTGAAGTGGAGAGTTCTG 1365 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| ||| || ||||| ||||||||| || ||||||||||||| Sbjct 1366 ACACAATTGATAATGTCAAAGCAAAGATACAGGATAAAGAAGGTATCCCACCCGATCAAC 1425 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || ||||| || || || | || ||| | || | | |||||||| | Sbjct 1426 AGAGGCTTATATTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTGGCTGATTATAACA 1485 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||| || || ||| | ||| Sbjct 1486 TCCAAAAGGAGTCTACTCTGCAT 1508 >seq621678 Length=9740 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| |||| || || || |||||| | || || || | | Sbjct 990 TGCAGATCTTTGTCAAAACCCTAACGGGGAAGACGATTACTCTCGAGGTTGAGAGTTCTG 931 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || || || || || || ||||| |||||||||||||||| Sbjct 930 ATACGATTGATAACGTTAAGGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAAC 871 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | ||||| || || |||||||| || ||| ||||| || | ||||| |||| Sbjct 870 AGAGATTGATTTTCGCTGGCAAACAATTGGAGGATGGCAGAACCCTAGCCGATTACAATA 811 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | || || ||||| ||| | ||| Sbjct 810 TCCAGAAGGAATCCACTTTACAT 788 >seq553100 Length=2664 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || |||||||||||||| ||||||||| | || || || | | Sbjct 428 TGCAGATCTTTGTTAAGACATTAACAGGAAAGACAATTACTCTGGAAGTTGAGAGTTCTG 487 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| | | | ||||| |||| || || || || |||||||| || || ||||| | Sbjct 488 ATACCACTGACAATGTCAAAACCAAGATTCAGGACAAGGAAGGCATCCCTCCAGATCAGC 547 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || || || || ||||| | || ||| || || | |||| || |||| Sbjct 548 AGAGGCTAATCTTCGCCGGCAAACAGCTGGAAGATGGCAGGACTCTTGCAGACTACAATA 607 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | ||||| ||||| || ||||| Sbjct 608 TCCAAAAGGAATCCACAATCCA 629 >seq693518 Length=857 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || |||| || ||||| || || | || || ||| | Sbjct 522 TGCAGATCTTTGTCAAGACCCTAACCGGCAAAACGATCACCCTAGAGGTTGAATGCTCTG 581 Query 146092 ATACTATTCAAAATGTAAAAAAT-AAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||| ||| | || || |||| ||||| ||| ||| ||||| || || ||||||||| Sbjct 582 ATATGATTGACAAAGTTAAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCCGATCAA 641 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | ||||| || || || ||||| || ||| ||||| || | ||||| ||| Sbjct 642 CAGAGATTGATTTTCGCTGGCAAGCAATTGGAGGATGGCAGAACCCTAGCCGATTACAAT 701 Query 146211 ATACAAAAAGAATC 146224 || ||||| ||||| Sbjct 702 ATCCAAAAGGAATC 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 778360868280960