Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq550179 84.2 8e-12 seq649489 82.4 3e-11 >seq550179 Length=7187 Score = 84.2 bits (92), Expect = 8e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| | |||||||| || Sbjct 5874 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGAGAGCTACCAAA 5933 Query 50170 CTGCTCTACTCCGC 50183 || |||||| |||| Sbjct 5934 CTACTCTACCCCGC 5947 >seq649489 Length=1062 Score = 82.4 bits (90), Expect = 3e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | |||||||||||| | |||| ||| ||||||||| |||||||||| ||| Sbjct 278 TTGCGGAGACAAGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 219 Query 50171 TGCTCTAC 50178 |||||||| Sbjct 218 TGCTCTAC 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179890287745056