Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq500796 107 2e-18 seq502676 95.1 1e-14 seq5020 95.1 1e-14 seq621678 93.3 4e-14 >seq500796 Length=7474 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| | |||||||| || | ||||| ||||| ||||| || |||||||||||| Sbjct 2792 CCTCCCCTCAAACGCAATACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCA 2733 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| || || || |||||| |||||| ||| || ||||| ||||| Sbjct 2732 AGTGTCCTACCATCTTCAAGCTGCTTCCCAGCAAAGATCAAACGCTGTTGATCAGGAGGG 2673 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || || || ||| || || | | || | ||||||| ||| || Sbjct 2672 ATGCCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCAATTGTGTCTGAACTTTCAACC 2613 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||| || ||||| || || ||||| || ||||| Sbjct 2612 TCCAAGGTAATCGTCTTTCCTGTCAAAGTCTTCACGAAGATCTGCAT 2566 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 |||| || | ||| | || ||||||||||| ||||||||||| | ||| || Sbjct 2552 CGCAGCACAAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCTGCAAGTGTCCTTCCA 2493 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| |||||||||||||| |||||| | |||||| || ||||| |||||||||||| Sbjct 2492 TCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTGCTGGTCTGGAGGGATGCCTTCTTTG 2433 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || ||||| || | | || | || |||| | ||| ||||| | || | Sbjct 2432 TCCTGGATTTTGGCCTTGACATTGTCTATTGTATCTGAGCTTTCAACTTCCAGTGTAATT 2373 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| || | || || || || || ||||| Sbjct 2372 GTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 2338 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| | |||| || || || || || || |||||||| Sbjct 3021 GCCACCACGAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCTGC 2962 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || |||| || | ||||| || || || |||||| | || || ||||| ||||| || | Sbjct 2961 CAGAGTGCGTCCA-TCTTCAAGCTGCTTCCCAGCAAAAATGAGGCGTTGTTGATCCGGTG 2903 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| ||||| ||||||| || | | || | || |||| | || | Sbjct 2902 GGATCCCTTCCTTGTCTTGAATTTTTGCCTTCACATTATCAATTGTATCTGAGCTCTCAA 2843 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || | ||| | || || || ||||| ||||| || ||||||||||| Sbjct 2842 CCTCCAAAGTGATTGTTTTCCCAGTCAAAGTTTTGACAAATATTTGCAT 2794 >seq502676 Length=6550 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || ||||| | ||||||||| || || ||| |||||| | |||||| || Sbjct 1273 GTCGACTCCTTTTGAACGTTGTAATCTGCCAGAGTCCTCCCGTCTTCCAATTGTTTGCCT 1214 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| | ||||| | |||||||| || || |||||||||||||| |||||| ||| Sbjct 1213 GCAAATATCAGCCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTC 1154 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | || ||||| | ||| | || || ||||||| ||| Sbjct 1153 ACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGAGTAATTGTTTTACCGGTCAGGGTT 1094 Query 137395 TTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 1093 TTGACAAAAATCTGCAT 1077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||| |||| || ||||| || || |||||||||||| | || || || || Sbjct 1057 ACTAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAATCGGCTAGGGTTCTACCATCCTCC 998 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 |||||||| ||||| | |||| || |||||||||||||| || ||||| ||||| | Sbjct 997 AGTTGTTTCCCAGCGAAAATCAACCGCTGCTGATCGGGAGGAATACCTTCCTTGTCTTGA 938 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 ||||| ||| | | || | ||| || | || || || | ||| | ||| ||| Sbjct 937 ATTTTGGCTTTGACATTGTCGATCGTATCAGAACTCTCAACCTCCAGAGTGATCGTTTTG 878 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| | || || || || || ||||| Sbjct 877 CCGGTAAGAGTCTTGACAAAGATCTGCAT 849 >seq5020 Length=1186 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAAT-CGC 137242 ||| || |||| || | |||| ||| | ||| ||||| || || |||||||||| ||| Sbjct 1038 GCCGCCGCGTAGGCGAAGGACTAGATGCAGTGTTGATTCCTTCTGAATGTTGTAATCCGC 979 Query 137243 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | || || ||| || || || || || ||| |||| || || |||||||| |||| Sbjct 978 T-AAAGTCCTGCCGTCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCCGGAG 920 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| ||||| ||| || || | | || | ||||| | | ||| | Sbjct 919 GGATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTTTCGA 860 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| | ||| | || |||||||| | ||||| ||||| || ||||| Sbjct 859 CTTCGAGAGTGATGGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 811 >seq621678 Length=9740 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || ||||| | || || || ||||| ||||||||||| || || || ||||| Sbjct 555 ACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCCAAAGTCCTTCCATCTTCC 614 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | |||||| || ||| |||| || | |||||||| || || || ||||||||||| | Sbjct 615 AATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGAATTCCTTCTTTGTCCTGA 674 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 ||||| ||||| | || | ||||| | | || ||||| | || || || ||| Sbjct 675 ATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAACTGTTTTG 734 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || | ||||| ||||| || ||||| Sbjct 735 CCAGTTAGGGTTTTGACGAAAATCTGCAT 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483693442041600