Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq546928 96.9 8e-15 seq677466 86.0 1e-11 >seq546928 Length=8859 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/188 (73%), Gaps = 10/188 (5%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 ||||| |||||||| |||| | ||||| ||| |||||||| || ||||||||| Sbjct 5679 AGACACTTGAATGATGGGGATTTTATCCTGTTTAATCGGCAACCAAGCCTCCATAAAATG 5620 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAA--TGT 305421 ||||| |||| |||| | |||| ||||| || | || || || || || ||| Sbjct 5619 TCTATAATGGGGCATAGAATCAAG--ATTATGCCTTACTCAACGTTCCGCTTGAACTTGT 5562 Query 305422 AAGTG-CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTAC 305480 || ||| | || || ||||| ||||||||||| ||||||||||| |||||||| | Sbjct 5561 CTGTCACTT---CACCCTACAATGCTGATTTTGATGGGGATGAAATGAACATGCATGTTC 5505 Query 305481 CTCAATCA 305488 |||| ||| Sbjct 5504 CTCAGTCA 5497 >seq677466 Length=8805 Score = 86.0 bits (94), Expect = 1e-11 Identities = 271/415 (65%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || ||||||||||| || || || || || || || ||||| || || || ||||| Sbjct 7752 GCCTTTGCTTGTGTGGAGGGGATTTTTTTCTCTGGAAGCTTCTGCGCGATTTTCTGGCTG 7693 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 |||||||||||||||||||||||| | | || || || |||| || || || ||||| Sbjct 7692 AAGAAGCGTGGATTGATGCCTGGATTGACTTTTTCAAACGAATTGATTTCCAGGGATGAG 7633 Query 131987 GCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCT---GATAAACTTGA- 132042 | | || ||| ||||| | | || || |||| ||| || ||| Sbjct 7632 GGCCTCCACTGTGACTTTGCGTGCCTGCTTTACAG----CCTGCTGAAGATGAAGCTGAG 7577 Query 132043 TGAAAATAATATTAAACAACTTATAAGC-GAAGCAGTTGATATCGAGAAGGAGTTTATTA 132101 || | || | | || | || || || || ||||| ||||||| ||| ||| | Sbjct 7576 CGAGGAGAA-AGTGAAGGGCATAGTGGCGGATGCTGTTGAGATCGAGAGGGAATTTGTGT 7518 Query 132102 CAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTG 132161 || || |||| || ||| | |||||||||| ||| | |||| ||||||||| Sbjct 7517 GCGATGCGCTGCCGTGTGCGTTGGTGGGGATGAATGGTGAATTGATGAGCCAGTACATTG 7458 Query 132162 AATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAA 132221 |||| || || ||||| || | || | || ||| ||||| || || || | Sbjct 7457 AATTTGTGGCGGATCGATTGCTGAATGCGTTGGGGTATGGGAAGATGTACAATGTGCAGA 7398 Query 132222 ACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276 |||| | | |||||||||| || || | || || ||||| ||||| || Sbjct 7397 ACCCATTTGATTGGATGGAGTTGATCAGCCTGCAGGGGAAGACGAATTTCTTTGA 7343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174734825694768