Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq361176 104 2e-17 seq500796 100 2e-16 seq693518 96.9 2e-15 seq502676 95.1 8e-15 seq621678 91.5 1e-13 >seq361176 Length=4428 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 |||||||| ||| || || |||||||| |||| ||| ||||| | || || | || Sbjct 4234 TGTAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGC 4175 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||||||||||| |||||||||||| | || | ||||| ||||| || || Sbjct 4174 TTTCCGGCAAAAATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGGATCTT- 4116 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | || | ||| | ||| ||| ||||| || || | || ||||| ||||| || Sbjct 4115 AGCCTTGACGTTGTCGATGGTATCGGAGGATTCAACCTCCAGGGTAATCGTCTTACCCGT 4056 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || ||||||||||| Sbjct 4055 GAGGGTTTTGACGAAGATCTGCAT 4032 >seq500796 Length=7474 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||||||| || |||| ||| ||||| |||||| || ||||||||||||| Sbjct 2792 CCTCCCCTCAAACGCAATACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCA 2733 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || || | || || || ||||| ||||||||||| ||||| | || Sbjct 2732 AGTGTCCTACCATCTTCAAGCTGCTTCCCAGCAAAGATCAAACGCTGTTGATCAGGAGGG 2673 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | || || || || ||| || | | ||||| ||| | ||||| ||| ||| Sbjct 2672 ATGCCCTCCTTATCCTGAATCTT-GGCCTTAACATTGTCAATTGTGTC---TGAACTTTC 2617 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || ||||| || ||||| || || || || ||||||||||| Sbjct 2616 AACCTCCAAGGTAATCGTCTTTCCTGTCAAAGTCTTCACGAAGATCTGCAT 2566 >seq693518 Length=857 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 |||||||| | || ||||| || |||||||||| || || | | || |||||||| Sbjct 725 ATGTAGAGCGGATTCCTTTTGGATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAATTG 666 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || |||||||| | ||| ||||| | || | |||||| || || |||||| Sbjct 665 CTTGCCAGCGAAAATCAATCTCTGTTGATCGGGAGGGATACCTTCCTTATCTTGAATTTT 606 Query 33666 CTGTTTCAACATAGTCACGG-TGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 ||| ||| | |||| | || |||| || || | ||||||||||| || | Sbjct 605 GGCTTTTAACTTTGTCAATCATATCAGAGCATTCAACCTCTAGGGTGATCGTTTTGCCGG 546 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || |||||||||||||| Sbjct 545 TTAGGGTCTTGACAAAGATCTGCAT 521 >seq502676 Length=6550 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| | ||||||||| | || || | |||| ||||||||||| || ||||| Sbjct 1268 CTCCTTTTGAACGTTGTAATCTGCCAGAGTCCTCCCGTCTTCCAATTGTTTGCCTGCAAA 1209 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| | |||||||||| | || | ||||||||||| |||||| ||||| | Sbjct 1208 TATCAGCCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTCACGTT 1149 Query 33678 AGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 | | |||||| || || || | || || |||||||| || | ||||| || Sbjct 1148 ATCAATTGTGTCGGAGCTCTCAACTTCCAGAGTAATTGTTTTACCGGTCAGGGTTTTGAC 1089 Query 33738 AAAGATCTGCAT 33749 ||| |||||||| Sbjct 1088 AAAAATCTGCAT 1077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||||| || || | | || |||| |||||| || || ||| Sbjct 1039 TCCTTCTGAATGTTGTAATCGGCTAGGGTTCTACCATCCTCCAGTTGTTTCCCAGCGAAA 980 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| ||||||||||| | || | |||||| ||||| |||||| | || |||| Sbjct 979 ATCAACCGCTGCTGATCGGGAGGAATACCTTCCTTGTCTTGAATTTT-GGCTTTGACATT 921 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | || || || || || | ||||||||||| || || | || || || Sbjct 920 GTCGATCGTATCAGAACTCTCAACCTCCAGAGTGATCGTTTTGCCGGTAAGAGTCTTGAC 861 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 860 AAAGATCTGCAT 849 >seq621678 Length=9740 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || | || |||||||| | |||| ||| ||||| ||||||||||| | Sbjct 536 ACCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGC 595 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || ||||||||||| || ||||| || | | ||||||||| | || Sbjct 596 CAAAGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGG 655 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| ||| | || | |||||| || || Sbjct 656 AATTCCTTCTTTGTCCTGAATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCAAC 715 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||| | ||||| || |||| ||||| || || |||||||| Sbjct 716 TTCCAGCGTAACTGTTTTGCCAGTTAGGGTTTTGACGAAAATCTGCAT 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325522018728960