Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq784841 536 4e-148 seq585748 464 2e-126 seq585752 361 2e-95 seq492030 324 4e-84 seq572160 136 1e-27 seq567144 114 4e-21 seq572830 104 7e-18 >seq784841 Length=3474 Score = 536 bits (594), Expect = 4e-148 Identities = 711/977 (73%), Gaps = 10/977 (1%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | ||||||||||| |||| ||| |||| ||||||| Sbjct 2993 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGGTTGGTGTTTTGATGAT 2934 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | |||| || |||||||| ||||||| ||||| |||| Sbjct 2933 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAG 2875 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || || |||||||||||| | || | Sbjct 2874 TGGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACGATATTA 2815 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || ||||| | || || |||||||| || Sbjct 2814 TCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATCGGTTTGCATTTTTACCCAATCTG 2757 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 |||||| | || ||||||| ||| | |||||| | || || | |||| | || | Sbjct 2756 GGAAGCAACATCCGTTGATGAGTGGTTATACAACTGTGGTCCTTATGAACTAATTGTTCT 2697 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 |||||| | |||| | | ||||||||| || ||||||||| |||| | || || Sbjct 2696 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAAATTAGTTTCCGTCT 2637 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| | |||| || | |||| |||||||| || || || Sbjct 2636 GGGTATGCGACCTTGGATTGCTTTTGCATATTTAACTCCTGTTGCAGCTGCTATCGCTGT 2577 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | ||||||| ||||||| || || || || |||| ||||||| | || || | Sbjct 2576 -TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTT 2518 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||||| ||| | ||||||||||| || || ||||| || |||||||| | Sbjct 2517 CTGGTACTTTCAACTTTATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCAT 2458 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||| | || || |||||||||||||| || || ||||||| ||| ||||| |||| Sbjct 2457 TTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAATGCTATGCATGGTT 2398 Query 20106 CGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | |||| || | || | ||| | | || || || ||| | ||| | || | ||| Sbjct 2397 C-CTTGATAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTACTAATGAAGGT 2339 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 ||||| ||||| ||||| ||||| || ||||| || ||||||||||||||||| ||||| Sbjct 2338 TACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGC 2279 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || |||| |||||||| || ||| ||||| ||||| ||||||||||| | ||| Sbjct 2278 CGACTGATATTCCAATATACTAGTTTTAACAACTCTCGTTCATTACACTTCTTCTTAGCT 2219 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || ||||| || || || || |||||| |||| || || || || ||||| || || Sbjct 2218 GCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 2159 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 | ||||||||||| || |||| || | | || | | || ||||| ||| ||||| Sbjct 2158 TTAAACGGTTTCAATTTCTACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACT 2099 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| || ||||||||||||| || || | || || ||||||||||| |||||| Sbjct 2098 TGGGCTGATATCATCAATCGTGCTAACCTTGGTCTGGAAGTTATGCATGAACGTAATGCT 2039 Query 20465 CATAACTTCCCACTTGA 20481 ||||||||||| || || Sbjct 2038 CATAACTTCCCTCTGGA 2022 >seq585748 Length=906 Score = 464 bits (514), Expect = 2e-126 Identities = 614/840 (73%), Gaps = 14/840 (2%) Strand=Plus/Minus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 ||| | ||||||||||| |||| |||||||| ||||||| || | || ||| Sbjct 834 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 776 Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644 || | | || || |||||||| |||||| | ||||| ||||| || |||||||| || Sbjct 775 CGCAACTTTTGTATTTATTATTGCTTTCATTACTGCTCCTCCAGTGGATATTGATGGTAT 716 Query 19645 CCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGT 19704 || ||||| || || || || ||||| |||||||| || || || || ||| | | Sbjct 715 TCGTGAACCTGTTTCTGGGTCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTAT 656 Query 19705 TCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTT 19762 ||| | | ||| || |||| | || || |||||||| |||||||| || || Sbjct 655 TCCTACTTCTGCA--GCAATCGATTTGCATTTTTACCCAATCTGGGAAGCAGCATCCGTT 598 Query 19763 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 19822 ||||| ||| | |||||||| || || | |||| | || | ||| || | |||| Sbjct 597 GATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACATCTTACTTGGT 538 Query 19823 ATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGG 19882 | | ||||||||| || |||||||||||||| | || || || ||| | |||||| Sbjct 537 GTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGG 478 Query 19883 ATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCC 19941 ||| |||||| || || ||||| |||||||| | |||| || ||||| | ||||||| Sbjct 477 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGTTACTGCTGT-TTTCTTGATCTACCC 419 Query 19942 GTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTA 20001 | ||||| || || || || |||| ||||||| | || || || ||||| ||||||| Sbjct 418 AATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTT 359 Query 20002 CATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGT 20061 ||| | |||||||| || || || ||||| || |||||||| || |||||| | || || Sbjct 358 TATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGT 299 Query 20062 GGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTC 20121 |||||||||||||| || || ||||||||| | ||||| ||||| |||| || || || Sbjct 298 AGCTGGTGTATTCGGCGGCTCCCTATTCAGTTCTATGCATGGTTC-CTTGGTAAGTTCTA 240 Query 20122 GCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCA 20178 | ||| | | || || || ||| | ||| || | || | |||||||| ||||| || Sbjct 239 GTTTGATCAGGGAAACCACAGAAAATGAA--TCCGCTAATGAAGGTTACAAATTTGGTCA 182 Query 20179 AGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCA 20238 ||| ||||| || ||||| || ||||||||||||||||| ||||| || |||||||||| Sbjct 181 AGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCA 122 Query 20239 ATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGT 20298 || ||| ||||||||| ||||| ||||||||||||| ||||| ||||| || || Sbjct 121 ATTTGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGT 62 Query 20299 AGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAA 20358 || || | |||| |||| || || || || ||||| || || | ||||||||||| Sbjct 61 GGGTATCTAGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAA 2 >seq585752 Length=1498 Score = 361 bits (400), Expect = 2e-95 Identities = 476/653 (73%), Gaps = 5/653 (1%) Strand=Plus/Minus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||||||||| | |||||||||||||| | | || || ||| | |||||||| ||| Sbjct 1472 TTACATGGGTCATGAGTGGGAACTTAGTTTCCTTCTGGGTATGCGATCTTGGATTGTTGT 1413 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCA 19950 ||| || || |||| | | |||| || | | || || | |||||| | | ||||| Sbjct 1412 TGCATATTCAGCTCTTGCTACAGCTGCTACCGTTGTTTTCTTAATCTACCAGATCGGTCA 1353 Query 19951 GGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGT 20010 || || || || |||| ||||||| | || || || ||||| ||||||| ||| | || Sbjct 1352 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATGATTGT 1293 Query 20011 ATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGT 20070 |||||| || | || ||||| || |||||||| || |||||| | ||||| |||||||| Sbjct 1292 ATTCCAGGCTAAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 1233 Query 20071 ATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGC 20129 |||||| || || |||||| ||| ||| | ||||| |||| || | || | ||| | Sbjct 1232 ATTCGGCGGCTCCTTATTCAATGCTATGAATGGTTCCTTTGTAAC-TTCTAGTTTGATTA 1174 Query 20130 GTGAGACTACTGAACAGGAAAGTCAGAACT-ATGGTTACAAGTTTGGGCAAGAAGAAGAG 20188 | || || || ||| | | || || | | | |||||||| | ||| ||||| ||||| Sbjct 1173 GGGAAACCACAGAAAATG-AATCCACTAGTGAAGGTTACAAATGTGGTCAAGAGGAAGAA 1115 Query 20189 ACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCT 20248 || ||||| || ||||||||||||||||| ||||| || ||||||||||||| || | Sbjct 1114 ACTTATAATATTGTAGCCGCTCATGGTTATTTTGGTCGACTGATCTTCCAATATACTAGT 1055 Query 20249 TTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGG 20308 |||||||| ||||| ||||||||||||| ||| | ||||| || |||| | | | Sbjct 1054 TTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTTCTTGGCCTGTACTAGGTGTCTAG 995 Query 20309 TTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAG 20368 ||| || | || || || | || |||| || || | |||| |||||| || ||||| Sbjct 994 TTCACTACTTTAGGTATTACAACTATGGTTTTCAACTTAAACGATTTCAATTTCAACCAA 935 Query 20369 TCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCT 20428 || | | || | | | || ||| | ||| |||||| |||||| || ||||||||||| Sbjct 934 TCTATAGTTGATAGCCAAGGCCGT-TAATTAATACTTAGGCTGATATCATCAATCGTGCT 876 Query 20429 AATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGA 20481 || || || | || || ||||||||| |||||||||||||||| || || Sbjct 875 AACCTTGGTATGGAAGTTATGCATGAAACTCATGCTCATAACTTCCCTCTAGA 823 >seq492030 Length=881 Score = 324 bits (358), Expect = 4e-84 Identities = 365/484 (75%), Gaps = 6/484 (1%) Strand=Plus/Plus Query 19946 GGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATG 20005 ||||| || || || || |||| ||||||| | || || || ||||| ||||||| ||| Sbjct 401 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATG 460 Query 20006 TTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCT 20065 | |||||| | || || || ||||| || |||||||| || |||||| | || || ||| Sbjct 461 ATTGTATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCT 520 Query 20066 GGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTT 20125 ||||||||||| || || ||||||||||| ||||| | ||| |||| || | || | || Sbjct 521 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGATTC-CTTGGTAACTTCTAGTTT 579 Query 20126 GTGC-GTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAA 20182 | | | || || || ||| | ||| || | || | |||||||| ||||| ||||| Sbjct 580 GATCAGGGAAACCACAGAAAATGAA--TCCGCTAATGAAGGTTACAAATTTGGTCAAGAG 637 Query 20183 GAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATAC 20242 ||||| || ||||| || ||||||||||||||||| ||||| || ||||||||||||| Sbjct 638 GAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCAATAT 697 Query 20243 GCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGG 20302 ||| ||||||||| ||||| ||||||||||||| ||||| ||||| || || || Sbjct 698 GCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGT 757 Query 20303 ATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTT 20362 || |||||| |||| || || || || ||||| || || | ||||||||||| || Sbjct 758 ATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCCTTCAACTTAAACGGTTTCAATTTC 817 Query 20363 AACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAAT 20422 ||||| || | | || | | || ||||| ||| ||||||||||||| || ||||| Sbjct 818 AACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAAT 877 Query 20423 CGTG 20426 |||| Sbjct 878 CGTG 881 >seq572160 Length=4591 Score = 136 bits (150), Expect = 1e-27 Identities = 159/210 (76%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 20039 CACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATG 20098 ||||| || |||||| | || || |||||||||||||| || || |||||||||| ||| Sbjct 4222 CACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGTTATG 4281 Query 20099 CACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAG-- 20155 || ||||| |||| || | || | ||| | | || || | ||| | ||| || | Sbjct 4282 CATGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAA--TCCGCT 4338 Query 20156 AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGT 20215 || | |||||||| ||||| ||||| ||||| || |||| || ||||||||||||||| Sbjct 4339 AATGAAGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAGTATTGTAGCCGCTCATGGT 4398 Query 20216 TACTTTGGACGTTTGATCTTCCAATACGCT 20245 || ||||| | ||||||||||||| ||| Sbjct 4399 TATTTTGGCCAACTGATCTTCCAATATGCT 4428 >seq567144 Length=1974 Score = 114 bits (126), Expect = 4e-21 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 20311 CGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTC 20370 |||||| || || || || ||||| || || | ||||||||||| || ||||| || Sbjct 175 CGCTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAATTTCAACCAATC 234 Query 20371 CCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAA 20430 | | || | | || ||||| ||| |||||||||||| || ||||||||||||| Sbjct 235 TGTAGTTGATAGTCAAGGCCGTGTAATTAGTACTTGGGCTGATATCATCAATCGTGCTAA 294 Query 20431 TCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGA 20481 || || | || || ||||||||||| ||||||||||||||||| || || Sbjct 295 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 345 >seq572830 Length=4883 Score = 104 bits (114), Expect = 7e-18 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 20084 CTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGA 20142 ||| ||||||| ||||| ||||| |||| ||| | || | ||| | | || || || || Sbjct 795 CTACTCAGTGCTATGCATGGTTC-CTTGGTACCTTCTAGTTTGATCAGGGAAACCACAGA 737 Query 20143 ACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGT 20202 | | ||| || | |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 736 AAATGAATCCACTAATGAAGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGT 677 Query 20203 AGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCA 20238 ||||||||||||||| ||||| || |||||||||| Sbjct 676 AGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCA 641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147425021457504