Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq784841 520 3e-143 seq585748 435 9e-118 seq585752 340 5e-89 seq492030 295 2e-75 seq572160 125 2e-24 seq567144 123 7e-24 seq572830 89.7 1e-13 >seq784841 Length=3474 Score = 520 bits (576), Expect = 3e-143 Identities = 713/986 (72%), Gaps = 10/986 (1%) Strand=Plus/Minus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | || ||| | ||||||||||| |||| ||| |||| ||||||| Sbjct 2993 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGGTTGGTGTTTTGATGAT 2934 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAG 28756 || | || ||| || | |||| || |||||||| ||||||| || || |||| Sbjct 2933 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAG 2875 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| || || |||||||| |||| ||| || ||||||||| | || | Sbjct 2874 TGGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACGATATTA 2815 Query 28817 TATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | || || ||| | | || | | ||| || ||||| | || || |||||||| || Sbjct 2814 TCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATCGGTTTGCATTTTTACCCAATCTG 2757 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 28934 |||||| | || ||||||| ||| | |||||| | || || | |||| | || | Sbjct 2756 GGAAGCAACATCCGTTGATGAGTGGTTATACAACTGTGGTCCTTATGAACTAATTGTTCT 2697 Query 28935 CCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACT 28994 |||||| | |||| || | ||||||||| || ||||||||| |||| | || || Sbjct 2696 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAAATTAGTTTCCGTCT 2637 Query 28995 AGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGC-ATCTGCGG 29053 || ||| | || |||||| | | ||||| | | |||| || ||||| || ||| || | Sbjct 2636 GGGTATGCGACCTTGGATTGCTTTTGCATATTTAACTCCTGTTGCAGCTGCTATC-GCTG 2578 Query 29054 TTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTT 29113 ||||| | |||||||| | |||||||| |||| || | |||||| | || |||| Sbjct 2577 TTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTT 2518 Query 29114 CAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGT 29173 | || || ||||||| ||| | || |||||||| || || ||||| || |||||||| | Sbjct 2517 CTGGTACTTTCAACTTTATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCAT 2458 Query 29174 TCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTT 29233 | |||||| | ||||| ||||| || ||||| ||||| ||||| | ||| ||||| |||| Sbjct 2457 TTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAATGCTATGCATGGTT 2398 Query 29234 CGCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGT 29292 | |||| | | || | ||| | | || || || ||| | ||| || | ||| Sbjct 2397 C-CTTGATAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTACTAATGAAGGT 2339 Query 29293 TACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGA 29352 ||||| ||||| ||||| ||||| |||||||| || ||||||||||| ||||| ||||| Sbjct 2338 TACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGC 2279 Query 29353 CGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCT 29412 || |||| ||||||||| || ||| || || ||||| ||||||||||| | ||| Sbjct 2278 CGACTGATATTCCAATATACTAGTTTTAACAACTCTCGTTCATTACACTTCTTCTTAGCT 2219 Query 29413 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 29472 || ||||| || || || || |||||| |||| || || || || ||||| || || Sbjct 2218 GCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 2159 Query 29473 CTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACT 29532 | |||||||| || || |||| || | | || | | || ||||| ||||||||| Sbjct 2158 TTAAACGGTTTCAATTTCTACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACT 2099 Query 29533 TGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCT 29592 ||||||||| | ||||||| |||||||| || | ||||| |||||||| ||||||||| Sbjct 2098 TGGGCTGATATCATCAATCGTGCTAACCTTGGTCTGGAAGTTATGCATGAACGTAATGCT 2039 Query 29593 CATAACTTCCCACTTGATCTGGCTAC 29618 ||||||||||| || ||| | ||||| Sbjct 2038 CATAACTTCCCTCTGGATTTAGCTAC 2013 >seq585748 Length=906 Score = 435 bits (482), Expect = 9e-118 Identities = 603/837 (72%), Gaps = 8/837 (1%) Strand=Plus/Minus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 ||| | ||||||||||| |||| |||||||| ||||||| || | || ||| Sbjct 834 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 776 Query 28714 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCAT 28772 || | | || || |||||||| |||||| | || || ||||| || |||||||| || Sbjct 775 CGCAACTTTTGTATTTATTATTGCTTTCATTACTGCTCCTCCAGTGGATATTGATGGTAT 716 Query 28773 CCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGT 28832 || |||||||| |||| ||| || || |||||||| || || || || ||| | | Sbjct 715 TCGTGAACCTGTTTCTGGGTCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTAT 656 Query 28833 ACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTT 28890 || | | ||| || |||| | || || |||||||| |||||||| || || Sbjct 655 TCCTACTTCTGCA--GCAATCGATTTGCATTTTTACCCAATCTGGGAAGCAGCATCCGTT 598 Query 28891 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 28950 ||||| ||| | |||||||| || || | |||| | || | ||| || | |||| Sbjct 597 GATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACATCTTACTTGGT 538 Query 28951 GTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGG 29010 || | ||||||||| || |||||||||||||| | || || || ||| | || ||| Sbjct 537 GTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGG 478 Query 29011 ATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCA 29070 ||| ||| ||||| |||||||| || ||||| | |||| |||||| | |||||||| Sbjct 477 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGTTACTGCTGTTTTCTTGATCTACCCA 418 Query 29071 TTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTAC 29130 |||||||||| |||| || | |||||| | || ||||| || || ||||||| Sbjct 417 ATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTT 358 Query 29131 ATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTT 29190 ||| | || ||||| || || || ||||| || |||||||| || |||||| | ||||| Sbjct 357 ATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTA 298 Query 29191 GCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCG 29250 ||||| || ||||| ||||| ||||| ||| | ||||| ||||| |||| | || || | Sbjct 297 GCTGGTGTATTCGGCGGCTCCCTATTCAGTTCTATGCATGGTTC-CTTGGTAAGTTCTAG 239 Query 29251 CTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGA 29309 ||| | | || || || ||| | || || | |||||||| ||||| ||||| Sbjct 238 TTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGA 179 Query 29310 AGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATA 29369 ||||| |||||||| || ||||||||||| ||||| ||||| || |||||||||||| Sbjct 178 GGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCAATT 119 Query 29370 TGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGG 29429 |||| |||||| || ||||| ||||||||||||| ||||| ||||| || || || Sbjct 118 TGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGG 59 Query 29430 GATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAA 29486 || | |||| |||| || || || || ||||| || || | |||||||| || Sbjct 58 TATCTAGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAA 2 >seq585752 Length=1498 Score = 340 bits (376), Expect = 5e-89 Identities = 489/683 (72%), Gaps = 5/683 (1%) Strand=Plus/Minus Query 28936 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 28995 |||||| | |||| || | ||||||||| | |||||||||||||| | | || Sbjct 1495 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCATGAGTGGGAACTTAGTTTCCTTCTG 1436 Query 28996 GGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTT 29055 || ||| | | |||||| ||| ||||| ||||||| | |||| || | | ||| Sbjct 1435 GGTATGCGATCTTGGATTGTTGTTGCATATTCAGCTCTTGCTACAGCTGCTACCGTTGTT 1376 Query 29056 TTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCA 29115 ||| | |||||| |||||||||| |||| || | |||||| | || ||||| Sbjct 1375 TTCTTAATCTACCAGATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCT 1316 Query 29116 GGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTC 29175 || || ||||||| ||| | || ||||| || | || ||||| || |||||||| || Sbjct 1315 GGTACTTTCAACTTTATGATTGTATTCCAGGCTAAGCACAACATCCTTATGCACCCATTT 1256 Query 29176 CACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCG 29235 |||||| | || || ||||| || ||||| ||||| |||| | ||| ||| | ||||| Sbjct 1255 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTCAATGCTATGAATGGTTCC 1196 Query 29236 CTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACT-ATGGTT 29293 |||| || | || | ||| | | || || || ||| | || || | | | |||| Sbjct 1195 TTTGTAAC-TTCTAGTTTGATTAGGGAAACCACAGAAAATGAATC-CACTAGTGAAGGTT 1138 Query 29294 ACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGAC 29353 |||| | ||| ||||| ||||| |||||||| || ||||||||||| ||||| ||||| | Sbjct 1137 ACAAATGTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGTC 1078 Query 29354 GTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTG 29413 | |||||||||||||| || |||||| || ||||| ||||||||||||| ||| Sbjct 1077 GACTGATCTTCCAATATACTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTT 1018 Query 29414 CCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATC 29473 | ||||| || |||| | | |||| || | || || || | || |||| || || Sbjct 1017 CTTGGCCTGTACTAGGTGTCTAGTTCACTACTTTAGGTATTACAACTATGGTTTTCAACT 958 Query 29474 TGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTT 29533 | |||| ||| || || ||||| || | | || | | | || ||| | |||||||||| Sbjct 957 TAAACGATTTCAATTTCAACCAATCTATAGTTGATAGCCAAGGCCGT-TAATTAATACTT 899 Query 29534 GGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTC 29593 ||||||| | ||||||| |||||||| || | ||||| |||||||| | |||||| Sbjct 898 AGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAAACTCATGCTC 839 Query 29594 ATAACTTCCCACTTGATCTGGCT 29616 |||||||||| || ||| | ||| Sbjct 838 ATAACTTCCCTCTAGATTTAGCT 816 >seq492030 Length=881 Score = 295 bits (326), Expect = 2e-75 Identities = 359/487 (74%), Gaps = 2/487 (0%) Strand=Plus/Plus Query 29067 CCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAA 29126 |||| |||||||||| |||| || | |||||| | || ||||| || || ||||| Sbjct 394 CCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAA 453 Query 29127 CTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGG 29186 || ||| | || ||| | || || || ||||| || |||||||| || |||||| | || Sbjct 454 CTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGG 513 Query 29187 CGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTC 29246 ||| ||||| || ||||| ||||| ||||| ||||| ||||| | ||| | || || || Sbjct 514 CGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGATTCCTTGGTAACTTC 573 Query 29247 CTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGAC 29305 | | ||| | | || || || ||| | || || | |||||||| ||||| | Sbjct 574 -TAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTC 632 Query 29306 AAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCC 29365 |||| ||||| |||||||| || ||||||||||| ||||| ||||| || ||||||||| Sbjct 633 AAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCC 692 Query 29366 AATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGG 29425 |||||||| |||||| || ||||| ||||||||||||| ||||| ||||| || | Sbjct 693 AATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAG 752 Query 29426 TAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTA 29485 | || || |||||| |||| || || || || ||||| || || | |||||||| | Sbjct 753 TGGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCCTTCAACTTAAACGGTTTCA 812 Query 29486 ACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTC 29545 | || ||||| || | | || | | || ||||| |||||||||||||||||| | Sbjct 813 ATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCA 872 Query 29546 TCAATCG 29552 ||||||| Sbjct 873 TCAATCG 879 >seq572160 Length=4591 Score = 125 bits (138), Expect = 2e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 29167 CACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATG 29226 ||||| || |||||| | ||||| ||||| || ||||| ||||| ||||| |||| ||| Sbjct 4222 CACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGTTATG 4281 Query 29227 CACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAA 29285 || ||||| | || || || | | ||| | | || || | ||| | || || Sbjct 4282 CATGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCATAGAAAATGAATCCGCTAA 4340 Query 29286 CTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTA 29345 | |||||||| ||||| ||||| ||||| ||||||| || ||||||||||| ||||| Sbjct 4341 TGAAGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAGTATTGTAGCCGCTCATGGTTA 4400 Query 29346 CTTTGGACGTTTGATCTTCCAATATGCT 29373 ||||| | ||||||||||||||||| Sbjct 4401 TTTTGGCCAACTGATCTTCCAATATGCT 4428 >seq567144 Length=1974 Score = 123 bits (136), Expect = 7e-24 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 29439 CGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTC 29498 |||||| || || || || ||||| || || | |||||||| || || ||||| || Sbjct 175 CGCTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAATTTCAACCAATC 234 Query 29499 GCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAA 29558 | | || | | || ||||| |||| ||||||||||||| | ||||||| ||||| Sbjct 235 TGTAGTTGATAGTCAAGGCCGTGTAATTAGTACTTGGGCTGATATCATCAATCGTGCTAA 294 Query 29559 CCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 ||| || | ||||| |||||||| |||||||||||||||||||| || ||| | ||| Sbjct 295 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATTTAGCT 352 >seq572830 Length=4883 Score = 89.7 bits (98), Expect = 1e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 |||||||| ||||| ||||| ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 717 GGTTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTT 658 Query 29350 GGACGTTTGATCTTCCA 29366 || || |||||||||| Sbjct 657 GGCCGACTGATCTTCCA 641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145282225127648