Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq784841 583 3e-162 seq585748 486 5e-133 seq585752 349 1e-91 seq492030 306 1e-78 seq567144 134 4e-27 seq388749 86.0 2e-12 >seq784841 Length=3474 Score = 583 bits (646), Expect = 3e-162 Identities = 730/991 (74%), Gaps = 10/991 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || ||||||||||| || || ||| |||| || Sbjct 2998 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGGTTGGTGTTTTG 2939 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || |||||||||||||||| ||| | Sbjct 2938 ATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGTTGCTC 2881 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| || || |||||||| || || || |||||| | || ||| |||||||||||| Sbjct 2880 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACG 2821 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | |||| | | ||| || ||||| | || || ||||| Sbjct 2820 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATCGGTTTGCATTTTTACCC 2763 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| |||||||| | || ||||||| ||| | |||||| | || || | |||| | Sbjct 2762 AATCTGGGAAGCAACATCCGTTGATGAGTGGTTATACAACTGTGGTCCTTATGAACTAAT 2703 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || | |||||| | |||| || | ||||||||| || ||||||||| |||| | Sbjct 2702 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAAATTAGTTT 2643 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 || || || ||||| ||||||||| | |||| || | | |||||||||| || || Sbjct 2642 CCGTCTGGGTATGCGACCTTGGATTGCTTTTGCATATTTAACTCCTGTTGCAGCTGCTAT 2583 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGG 19199 || || ||| | |||| ||| |||||||||| ||| || | ||||||| | || Sbjct 2582 CGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 2523 Query 19200 TATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCA 19259 ||| |||||| ||||||| ||| |||||||||| ||||| || |||||||| ||||| Sbjct 2522 AATTTCTGGTACTTTCAACTTTATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCA 2463 Query 19260 CCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCA 19319 ||| || |||||| | || || |||||||| |||||||| || ||||| | ||| ||||| Sbjct 2462 CCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAATGCTATGCA 2403 Query 19320 CGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAAACTACTGAAGAGGTATCTCAGAACT 19378 ||||| |||| || | || | ||| | | ||||| || ||| | | |||| || Sbjct 2402 TGGTTC-CTTGATAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTACTAATG 2344 Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438 | || ||||| ||||| ||||| ||||| |||||||| ||||| || |||||||| |||| Sbjct 2343 AAGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATT 2284 Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 |||| || || || ||||| || | || ||||| ||||| |||| ||||| | Sbjct 2283 TTGGCCGACTGATATTCCAATATACTAGTTTTAACAACTCTCGTTCATTACACTTCTTCT 2224 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558 | |||||||||||||| || || || ||||| | || | || | ||||| ||||| | Sbjct 2223 TAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTT 2164 Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTG 19618 ||||||| || || || || || |||| || | |||| | | || ||||| ||| Sbjct 2163 TCAACTTAAACGGTTTCAATTTCTACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTA 2104 Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTA 19678 ||||||||||||| || |||||||||||||||| || | || || ||||| ||||||| Sbjct 2103 ATACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTCTGGAAGTTATGCATGAACGTA 2044 Query 19679 ATGCTCATAACTTCCCACTTGATTTGGCTAC 19709 |||||||||||||||| || ||||| ||||| Sbjct 2043 ATGCTCATAACTTCCCTCTGGATTTAGCTAC 2013 >seq585748 Length=906 Score = 486 bits (538), Expect = 5e-133 Identities = 629/859 (73%), Gaps = 10/859 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||| | ||||||| || || ||||||||||| || || |||||||| || Sbjct 855 TTCTGTAACTCGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 796 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| ||||| || |||||||| |||||| |||| | Sbjct 795 ATGATCCC-TACCTTATTGACCGCAACT-TTTGTATTTATTATTGCTTTCATTACTGCTC 738 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| || || |||||||| || || || |||||| | || ||| ||||| ||||||| Sbjct 737 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTACGGAAACA 678 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | |||| | | ||| || |||| | || || ||||| Sbjct 677 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCA--GCAATCGATTTGCATTTTTACCC 620 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| |||||||| || ||||||| ||| | |||||||| || || | |||| | Sbjct 619 AATCTGGGAAGCAGCATCCGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAAT 560 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || | ||| || | |||| || | ||||||||| || |||||||||||||| | Sbjct 559 TGTTCTACACATCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTT 500 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 || || || ||||| ||||||||| |||||| || |||||||||||||| || | | Sbjct 499 CCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGTTAC 440 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGG 19199 ||| || ||| | |||| ||| | |||||||| ||| || | ||||||| | || Sbjct 439 TGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 380 Query 19200 TATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCA 19259 ||| |||||| ||||||| ||| |||||||||||||||| || |||||||| ||||| Sbjct 379 AATTTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 320 Query 19260 CCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCA 19319 ||| || |||||| | || || |||||||| |||||||| || ||||| ||| | ||||| Sbjct 319 CCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTTCTATGCA 260 Query 19320 CGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACT 19378 ||||| |||| || || || | ||| | | ||||| || ||| | | ||| || Sbjct 259 TGGTTC-CTTGGTAAGTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATG 201 Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438 | || ||||| ||||| ||||| ||||| |||||||| ||||| || |||||||| |||| Sbjct 200 AAGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATT 141 Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 |||| || || || ||||| | || |||||||| ||||| |||| ||||| Sbjct 140 TTGGCCGACTGATCTTCCAATTTGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCC 81 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558 | |||||||||||||| || || || | ||| | || | || | ||||| ||||| | Sbjct 80 TAGCTGCTTGGCCTGTAGTGGGTATCTAGTTCACTGCTTTAGGTATTAGCACTATGGCTT 21 Query 19559 TCAACTTGAATGGCTTTAA 19577 ||||||| || || || || Sbjct 20 TCAACTTAAACGGTTTCAA 2 >seq585752 Length=1498 Score = 349 bits (386), Expect = 1e-91 Identities = 491/683 (72%), Gaps = 5/683 (1%) Strand=Plus/Minus Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | |||| || | ||||||||| | |||||||||||||| | | || Sbjct 1495 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCATGAGTGGGAACTTAGTTTCCTTCTG 1436 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 || ||||| |||||||| |||||| || ||||||| || | | || || | | || Sbjct 1435 GGTATGCGATCTTGGATTGTTGTTGCATATTCAGCTCTTGCTACAGCTGCTACCGTTGTT 1376 Query 19147 TTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGT 19206 ||| | |||| | | |||||||| ||| || | ||||||| | || ||| | Sbjct 1375 TTCTTAATCTACCAGATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCT 1316 Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 ||||| ||||||| ||| |||||||||||||| | || |||||||| |||||||| || Sbjct 1315 GGTACTTTCAACTTTATGATTGTATTCCAGGCTAAGCACAACATCCTTATGCACCCATTT 1256 Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCG 19326 |||||| | ||||| |||||||| |||||||| || |||| | ||| ||| | ||||| Sbjct 1255 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTCAATGCTATGAATGGTTCC 1196 Query 19327 CTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACT-ATGGCT 19384 |||| || | || | ||| | | ||||| || ||| | | ||| || | | | || | Sbjct 1195 TTTGTAAC-TTCTAGTTTGATTAGGGAAACCACAGAAAATGAATC-CACTAGTGAAGGTT 1138 Query 19385 ACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTC 19444 |||| | ||| ||||| ||||| |||||||| ||||| || |||||||| |||||||||| Sbjct 1137 ACAAATGTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGTC 1078 Query 19445 GGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTG 19504 | || || ||||| || | |||||||| ||||| |||| ||||| | ||| Sbjct 1077 GACTGATCTTCCAATATACTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTT 1018 Query 19505 CTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACT 19564 |||||||||| | || | | ||| | | | || | | || |||| ||||||| Sbjct 1017 CTTGGCCTGTACTAGGTGTCTAGTTCACTACTTTAGGTATTACAACTATGGTTTTCAACT 958 Query 19565 TGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTT 19624 | || | || || || ||||| || | |||| | | | || ||| | ||| |||||| Sbjct 957 TAAACGATTTCAATTTCAACCAATCTATAGTTGATAGCCAAGGCCGT-TAATTAATACTT 899 Query 19625 GGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTC 19684 |||||| || |||||||||||||||| || | || || ||||| ||| | |||||| Sbjct 898 AGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAAACTCATGCTC 839 Query 19685 ATAACTTCCCACTTGATTTGGCT 19707 |||||||||| || ||||| ||| Sbjct 838 ATAACTTCCCTCTAGATTTAGCT 816 >seq492030 Length=881 Score = 306 bits (338), Expect = 1e-78 Identities = 362/488 (74%), Gaps = 2/488 (0%) Strand=Plus/Plus Query 19159 CCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAAC 19218 ||| | |||||||| ||| || | ||||||| | || ||| |||||| |||||| Sbjct 395 CCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAAC 454 Query 19219 TACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGT 19278 | ||| |||||||| ||||||| || |||||||| |||||||| || |||||| | || Sbjct 455 TTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGC 514 Query 19279 GTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCC 19338 || |||||||| |||||||| || ||||| ||||| ||||| | ||| |||| || | | Sbjct 515 GTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGATTC-CTTGGTAACTTC 573 Query 19339 TCGCTTGTGC-GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCA 19397 | | ||| | | ||||| || ||| | | ||| || | || ||||| ||||| || Sbjct 574 TAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCA 633 Query 19398 AGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCA 19457 ||| ||||| |||||||| ||||| || |||||||| |||||||| || || || ||||| Sbjct 634 AGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCA 693 Query 19458 GTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGT 19517 || || |||||||| ||||| |||| ||||| | |||||||||||||| || Sbjct 694 ATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGT 753 Query 19518 TGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAA 19577 || || ||||| | || | || | ||||| ||||| |||||||| || || || || Sbjct 754 GGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCCTTCAACTTAAACGGTTTCAA 813 Query 19578 CTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCT 19637 || ||||| || | |||| | | || ||||| ||| ||||||||||||| || | Sbjct 814 TTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCAT 873 Query 19638 CAATCGTG 19645 |||||||| Sbjct 874 CAATCGTG 881 >seq567144 Length=1974 Score = 134 bits (148), Expect = 4e-27 Identities = 127/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 19546 AGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAAT 19605 ||||| ||||| |||||||| || || || || || ||||| || | |||| | | Sbjct 191 AGCACTATGGCTTTCAACTTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 250 Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 || ||||| ||| |||||||||||| || |||||||||||||||| || | || || Sbjct 251 GGCCGTGTAATTAGTACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTT 310 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 ||||| ||||||||||||||||||||||| || ||||| ||| Sbjct 311 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGATTTAGCT 352 >seq388749 Length=375 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || |||||||||||||||||||| ||||| || || |||||||| || || || |||||| Sbjct 45 TTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTT 104 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 | || ||| ||||| |||||||| || || Sbjct 105 TCTGGGTCTCTACTTTACGGAAACAATATTAT 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139817460523104