Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq621678 95.1 1e-14 seq502676 89.7 5e-13 seq361176 87.8 2e-12 seq564812 84.2 2e-11 seq500796 82.4 7e-11 >seq621678 Length=9740 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||||||| | | ||||| ||||||| |||||| || | ||| Sbjct 314 ACGAAGGCGAAGAACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCAAGGGT 373 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| || || | | | || || | |||||||||||| || ||||| Sbjct 374 TCGTCCATCCTCGAGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGGATGCC 433 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || ||| ||| ||| | | || | ||| || | |||||| || | Sbjct 434 CTCTTTGTCCTGAATCTTTGCTTTGACATTATCAATAGTGTCAGAGCTCTCCACCTCCAG 493 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||||| ||||| | || |||||||| Sbjct 494 AGTAATGGTTTTTCCAGTCAATGTTTTCACAAATATCTGCAT 535 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| |||||||||||||| || || || | |||||| Sbjct 555 ACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCCAAAGTCCTTCCATCTTCC 614 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||| || | | |||| || | ||| ||||| || || || |||||||| || | Sbjct 615 AATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGAATTCCTTCTTTGTCCTGA 674 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | || | || |||| ||| ||||| | ||| | ||||| Sbjct 675 ATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAACTGTTTTG 734 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | |||||||||||| Sbjct 735 CCAGTTAGGGTTTTGACGAAAATCTGCAT 763 >seq502676 Length=6550 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||| |||||| || || || | | ||||| | ||||| || | | Sbjct 1270 GACTCCTTTTGAACGTTGTAATCTGCCAGAGTCCTCCCGTCTTCCAATTGTTTGCCTGCA 1211 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | ||| |||||||| || ||||||||||| || |||||| ||||| Sbjct 1210 AATATCAGCCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTCACG 1151 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| ||| ||||| | || | |||||||| ||||| ||||| Sbjct 1150 TTATCAATTGTGTCGGAGCTCTCAACTTCCAGAGTAATTGTTTTACCGGTCAGGGTTTTG 1091 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 1090 ACAAAAATCTGCAT 1077 >seq361176 Length=4428 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || |||||||||||| | || || ||| |||||||| || |||| Sbjct 4227 TTGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTTCCGG 4168 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | || |||||||| ||||| ||||| |||||||| || || || || || | Sbjct 4167 CAAAAATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGA 4108 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||||||| | || || || | || | ||| ||||| || || |||| Sbjct 4107 CGTTGTCGATGGTATCGGAGGATTCAACCTCCAGGGTAATCGTCTTACCCGTGAGGGTTT 4048 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| |||||||| Sbjct 4047 TGACGAAGATCTGCAT 4032 >seq564812 Length=421 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTA-GTCGCTCATGGTACGCGAATCTTC 131973 |||||||| | | ||||| |||||||||||||| | ||| || || | | |||| Sbjct 247 ACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAAGACGC-CAAAGTCCTTCCAACTTC 189 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | | ||| || | | |||| || | ||| ||||| || || || |||||||| || Sbjct 188 CAATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTTGTCCTC 129 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | || | || |||| ||| ||||| | ||| | |||| Sbjct 128 AATTTTGGCTTTTACATTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAATTGTTTG 69 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | |||||||||||| Sbjct 68 GCCAGTAAGAGTTTTGACGAAAATCTGCAT 39 >seq500796 Length=7474 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || || ||||| || | || || |||||| || || || || | | Sbjct 2075 GACTCTTTCTGGATATTGTAATCTGCAAGAGTCCGGCCATCTTCAAGTTGCTTTCCAGCA 2016 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 ||||||| | ||| ||||||||||| || ||||| ||||| ||| ||| || | Sbjct 2015 AAGATTAGCCTCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCCTTGAGA 1956 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | | || || |||| ||| | ||||||||||| ||||| || Sbjct 1955 TTATCGATGGTATCAGAGGTTTCAACCTCGAGCGTTATGGTTTTACCAGTAAGAGTCTTC 1896 Query 132110 ATGAAAATCTGCATG 132124 | || || |||||| Sbjct 1895 ACAAAGATTTGCATG 1881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471879118039680