Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq500796 109 5e-19 seq693518 98.7 9e-16 seq502676 89.7 5e-13 seq610506 82.4 7e-11 >seq500796 Length=7474 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||||||||| | ||||| ||| | ||||| | || || || | Sbjct 1653 CATGCAGATTTTTGTAAAAACTCTTACCGGTAAAACCATCACTCTGGAGGTTGAGAGCTC 1712 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| ||||| | || || || ||| ||||| || || || || || ||||| Sbjct 1713 CGATACCATCGACAATGTCAAGGCTAAGATTCAAGATAAGGAAGGGATTCCTCCAGATCA 1772 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || |||| | || || ||||| ||||||| ||||| | | |||||||| Sbjct 1773 GCAGAGGCTTATTTTTGCTGGAAAGCAACTTGAAGATGGTAGAACTCTTGCAGATTACAA 1832 Query 25354 TATTCAAAAAGAATCCACCATTCAT 25378 ||||||||||||||| ||| | ||| Sbjct 1833 TATTCAAAAAGAATCTACCCTCCAT 1857 >seq693518 Length=857 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/196 (71%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || ||||||| ||| ||||||| | || || ||| | Sbjct 521 ATGCAGATCTTTGTCAAGACCCTAACCGGCAAAACGATCACCCTAGAGGTTGAATGCTCT 580 Query 25235 GATACTATCGAGCAAGT-AAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||| || || |||| |||| |||||| ||||| || ||||| || |||||||| Sbjct 581 GATATGATTGACAAAGTTAAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCCGATCA 640 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || ||| | |||| || ||||| ||| | || |||| |||| | ||||||||| Sbjct 641 ACAGAGATTGATTTTCGCTGGCAAGCAATTGGAGGATGGCAGAACCCTAGCCGATTACAA 700 Query 25354 TATTCAAAAAGAATCC 25369 ||| ||||| |||||| Sbjct 701 TATCCAAAAGGAATCC 716 >seq502676 Length=6550 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | ||||| ||| ||||||| | || || || Sbjct 849 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAAACGATCACTCTGGAGGTTGAGAGTTCT 908 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| |||||| || || || ||||| || ||||||||| Sbjct 909 GATACGATCGACAATGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 968 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| || || |||||||| || |||| ||||| | ||||||||| Sbjct 969 CAGCGGTTGATTTTCGCTGGGAAACAACTGGAGGATGGTAGAACCCTAGCCGATTACAAC 1028 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| || ||||| || |||| |||| Sbjct 1029 ATTCAGAAGGAATCGACTCTTCACCTAGT 1057 >seq610506 Length=714 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 ||||| || || ||||||| ||| |||||| | || || ||| | ||||| || Sbjct 243 TTTGTCAAGACCCTAACCGGCAAAA-GATCACCCTAGAGGTTGAATGCTCTGATACGATT 185 Query 25244 GAGCAAGT-AAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACT 25302 || | || |||| | |||||| ||||| || ||||| || |||||||| | ||| | Sbjct 184 GACAACGTTAAAAGACAAAATTCAAGATAAGGAAGGTATCCCTCCCGATCAATAGAGATT 125 Query 25303 CATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAA 25362 |||| || ||||| ||| | || |||| |||| | |||||||||||| ||||| Sbjct 124 GATTTTCGCTGGCAAGCAATTGGAGGATGGCAGAACCCTAGCCGATTACAATATCCAAAA 65 Query 25363 AGAATCC 25369 ||||| Sbjct 64 GAAATCC 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440675235740160