Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq621678 95.1 1e-14 seq502676 89.7 4e-13 seq690132 86.0 5e-12 >seq621678 Length=9740 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| || ||||| | |||||||| || |||| ||||| || | | Sbjct 763 ATGCAGATTTTCGTCAAAACCCTAACTGGCAAAACAGTTACGCTGGAAGTTGAGAGCTCC 704 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||| |||||| ||||||||||| | || ||||| Sbjct 703 GACACAATTGATAACGTAAAAGCCAAAATTCAGGACAAAGAAGGAATTCCACCGGATCAG 644 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||| | ||| ||||||||||| |||||| | ||| ||| ||||||||| Sbjct 643 CAGAGGCTTATCTTTGCAGGCAAACAATTGGAAGATGGAAGGACTTTGGCGGATTACAAC 584 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| || || || | ||||| || | ||| | || || || Sbjct 583 ATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAGGCTGCGCGGTGG 537 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| |||||||||||||| || |||||||| |||| || | Sbjct 535 ATGCAGATATTTGTGAAAACATTGACTGGAAAAACCATTACTCTGGAGGTGGAGAGCTCT 476 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || ||| ||| ||| |||||||| ||| | || |||||| Sbjct 475 GACACTATTGATAATGTCAAAGCAAAGATTCAGGACAAAGAGGGCATCCCACCAGATCAA 416 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||||| || | ||||||||| || | || ||| ||| | | ||||||||| Sbjct 415 CAGAGGCTGATATTTGCGGGCAAGCAGCTCGAGGATGGACGAACCCTTGCTGATTACAAC 356 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 | ||||| || || || || ||||| || Sbjct 355 GTTCAAAAGGAGTCCACTCTGCATTTGGT 327 >seq502676 Length=6550 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| ||||| |||| || || || ||||| ||||| || | | Sbjct 1077 ATGCAGATTTTTGTCAAAACCCTGACCGGTAAAACAATTACTCTGGAAGTTGAGAGCTCC 1136 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | |||||| |||||| |||||||||||| | || ||||| Sbjct 1137 GACACAATTGATAACGTGAAAGCCAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAG 1196 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||||| || | ||| ||||||||||| ||||| | ||| ||| ||||||||| Sbjct 1197 CAGAGGCTGATATTTGCAGGCAAACAATTGGAAGACGGGAGGACTCTGGCAGATTACAAC 1256 Query 106440 ATACAAAAAGAATCTAC 106456 | ||||| || || || Sbjct 1257 GTTCAAAAGGAGTCGAC 1273 >seq690132 Length=1697 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| || ||||| | | |||||| || ||||| ||||| || | | Sbjct 835 ATGCAGATTTTCGTCAAAACTCTAATTGGCAAAACAATTACGCTGGAAGTTGAGAGCTCC 894 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||| |||||| ||||||||||| | || |||| Sbjct 895 GACACAATTGATAATGTAAAAGCCAAAATTCAGGACAAAGAAGGGATTCCACCGAATCAG 954 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||||| || | ||| ||||||||||| |||| | |||||| ||| ||||||| | Sbjct 955 CAGAGGCTCATCTGTGCAGGCAAACAATTGGAAGTTGAAAAAACTTTGGCGGATTACAGC 1014 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| || || || | ||||| || | ||| | || || || Sbjct 1015 ATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAGGCTGCGCGGTGG 1061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398434894575104