Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq794097 291 1e-72 seq677466 289 4e-72 seq611863 221 2e-51 >seq794097 Length=14469 Score = 291 bits (322), Expect = 1e-72 Identities = 394/540 (73%), Gaps = 13/540 (2%) Strand=Plus/Minus Query 1455736 CCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAA 1455794 ||||| |||||| ||| ||||||| || | ||||| || || |||||||||||| || Sbjct 12580 CCCGA-CCGCTTCTGTA-TGTTCCCTATTCTCTACCCGCAAATTTGGGAAATGTAC-AAG 12524 Query 1455795 AAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCAC 1455854 |||||| |||||||||| ||||| ||||| || ||||| | | | ||| |||| Sbjct 12523 AAGGCCCAGGCCTCCTTCTGGACTGCCGACGAAGTCGATTTGGCCCAGGACCTCTCCCAC 12464 Query 1455855 TGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 |||| || || | | |||| |||||||||||||||||||||||||| || ||| Sbjct 12463 TGGGACTCCCTCCTCCCCTCCGAGAAGCATTTCATCAAGCACGTCCTCGCCTTCTT-CGC 12405 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 ||| ||| |||||||| |||||| || |||| |||||| ||||| |||||||| | Sbjct 12404 CGCTTCCGACGGCATCGTCCTCGAGAATCTTGCCGCCCGCTTCATGAACGAGGTCCAGGT 12345 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | ||||| || || ||||| |||||||| |||||||| ||||||||||| || | Sbjct 12344 CTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATTGCCATCGAGAACATCCACTCCGAGAT 12285 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCG 1456094 ||| || ||||||| ||||| ||||||| | | |||||||| | ||||| || Sbjct 12284 GTACAGCCTTTTGATCGAGACCTATATCAAGGATTCTGCCGAGAAGGCCATGCTCTTCCG 12225 Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 ||||||| |||| | || | || ||| |||||| | ||||| || ||||| Sbjct 12224 CGCCATCCACACCATTCCCTGCGTCCAGAACAAGGCCAATTGGGCCCTGCGCTGGAT--- 12168 Query 1456155 CAAGGAGGGCCTCG-ACACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCAT 1456212 |||| || | ||| ||||||| || ||| ||| ||| |||| ||||| || Sbjct 12167 ---TCAGGGTTCCGAATCCTTCACCGAGCGTCTGCTCGCCTTCGCCTGCGTGGAGGGGAT 12111 Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 || ||||| || || |||||||| || || ||||| ||||||||||| | |||||||| Sbjct 12110 ATTCTTCTCCGGAAGCTTCTGCGCAATATTCTGGCTTAAGAAGCGCGGGTTGATGCCCGG 12051 >seq677466 Length=8805 Score = 289 bits (320), Expect = 4e-72 Identities = 394/542 (73%), Gaps = 12/542 (2%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| ||||||| ||| ||||||| |||| |||| | || ||||| |||||| | Sbjct 8202 AACCCCGACCGCTTCTGTA-TGTTCCCTATCCAGTACCCTCAAATCTGGGAGATGTACAA 8144 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC 1455852 |||| ||||||||||||| |||||||||||||||||||| | | || | || Sbjct 8143 GAAAG-CCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGATTTGTCCCAGGATATTCGCC 8085 Query 1455853 ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 |||||| || || | |||||||||||| ||||||||||||||||||||||| || | Sbjct 8084 ACTGGGACTCCCTCACTCCCGACGAGCGCCACTTCATCAAGCACGTCCTCGCCTTCTT-C 8026 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 |||||| |||||||||||| |||||| || |||||||| || ||||| |||||||| Sbjct 8025 GCCGCCTCCGATGGCATCGTTCTCGAGAATCTCGCCGGCCGTTTCATGAAGGAGGTCCAG 7966 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 | | ||||| || || ||||| ||||| ||||||||||| || |||||||| || Sbjct 7965 GTCTCTGAGGCCCGCGCCTTCTACGGCTTCCAAATCGCCATCGAGAATATCCACTCCGAG 7906 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTT 1456092 | ||| ||||| |||| ||||| ||||||| | | || ||| | ||| ||| Sbjct 7905 ATGTACAGTCTCCTCCTCGAATCCTACATCAAGGATTCCGAAGAAAAGAGCTCCCTTTTT 7846 Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 ||||| || || || || || | || |||||| | ||||| | |||||| Sbjct 7845 CGCGCAATTGATACTGTCCCTTGCGTCCAACGCAAGGCCAATTGGGCCCTCCGTTGGATC 7786 Query 1456153 AACAAGGAGGGC-CTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGC 1456210 || ||| || | |||||| |||||| | ||| |||||| | || ||||| Sbjct 7785 ------GATGGCTCTGAATCCTTTGCTGAGCGGATAATCGCCTTTGCTTGTGTGGAGGGG 7732 Query 1456211 ATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270 || |||||||| || || |||||||| || || ||||| |||||||| || | ||||| Sbjct 7731 ATTTTTTTCTCTGGAAGCTTCTGCGCGATTTTCTGGCTGAAGAAGCGTGGATTGATGCCT 7672 Query 1456271 GG 1456272 || Sbjct 7671 GG 7670 >seq611863 Length=950 Score = 221 bits (244), Expect = 2e-51 Identities = 253/335 (76%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| ||| ||| ||| ||||||| ||| | |||| | || ||||| |||||| | Sbjct 604 AACCCCGACCTCTTCTGTA-TGTTCCCTATCGGGTACCCTCAAATCTGGGAGATGTACAA 662 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC 1455852 |||| ||||||||| ||| |||||||||||||||||||| | | || | || Sbjct 663 GAAAG-CCGAGGCCTTCTTCTGGACCGCCGAGGAGGTCGATTTGTCCCAGGATATTCGCC 721 Query 1455853 ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 |||||| || || | |||||||||||| ||||||||||||||||||||||| || | Sbjct 722 ACTGGGACTCCCTCACTCCCGACGAGCGCCACTTCATCAAGCACGTCCTCGCCTTCTT-C 780 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 |||||| |||||||||||| |||||| || ||| |||| || ||||| |||||||| Sbjct 781 GCCGCCTCCGATGGCATCGTTCTCGAGAATCTCGCCTGCCGTTTCATGAAGGAGGTCCAG 840 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 | | ||||| || || ||||| ||||| ||||||||||| || |||||||| || Sbjct 841 GTCTCTGAGGCCCGCGCCTTCTACGGCTTCCAAATCGCCATCGAGAATATCCACTCCGAG 900 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | ||| ||||| |||| ||||| ||||||| Sbjct 901 ATGTACAGTCTCCTCCTCGAATCCTACATCAAGGA 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7101200662498656