Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq551794 132 7e-26 seq548568 132 7e-26 seq405401 132 7e-26 seq154576 123 3e-23 seq677466 93.3 6e-14 >seq551794 Length=11183 Score = 132 bits (146), Expect = 7e-26 Identities = 164/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | ||||||| ||| | |||| |||||||||| ||| ||| Sbjct 4336 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGAAGCATCGGAACAATGCCA 4395 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| | |||||||||||| || || |||||| | || ||||| ||| | ||| Sbjct 4396 TTAGATGTTCCATTTGTTCCACGTATGTAGCTTCCTGTAGCACGAATGTTATGAGCAGAA 4455 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| ||| | |||||| |||| ||| |||||||| Sbjct 4456 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAGTGTATCATATATG 4515 Query 69931 CCCTCTATGCTATCATCTATCATG-TTAAGAAGAAAACAGCT 69971 ||||| |||||||| || ||||| || ||| |||||||| Sbjct 4516 CCCTCAATGCTATCCTCCTTCATGCATATCAAG-AAACAGCT 4556 >seq548568 Length=13427 Score = 132 bits (146), Expect = 7e-26 Identities = 164/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||||||||| | ||||| ||||||| ||| | || | ||||| |||| ||| ||| Sbjct 4774 CCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGGAGCATTGGAACAATGCCA 4715 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 ||||| | |||||||||||| ||||||||||| |||| || ||||| | ||| Sbjct 4714 TTAGACATTCCATTTGTTCCACGGATATAACTTCCCGTTGCACGGATATTGTGTACAGAG 4655 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| ||| | |||||| || | |||||||||||| Sbjct 4654 ACCCCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTGAGTGTGTCATATATG 4595 Query 69931 CCCTCTATGCTATCATCTATCATG-TTAAGAAGAAAACAGCT 69971 ||||| || || |||||| ||||| || ||| |||||||| Sbjct 4594 CCCTCAATACTGTCATCTTTCATGCATATTAAG-AAACAGCT 4554 Score = 107 bits (118), Expect = 3e-18 Identities = 119/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 69490 TCTTTTTCATATT--GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547 ||| | ||||||| ||||||| ||| ||| ||||| || |||||| |||| |||| | Sbjct 5428 TCTCTCTCATATTTAGTGTATAAAGC--TTCAAATTCCTCGCCCCAACAATCAGCCAACC 5371 Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607 ||||| ||||||||||||| | |||||||||| ||| || ||||| | ||||| Sbjct 5370 CAGGAGATTCATTTGGACAAAACAATGACCACTGTCCATTGGACTGAACTCTCTCCATAA 5311 Query 69608 ATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCT 69644 ||||||| || ||||| || || ||| | |||||| Sbjct 5310 ATAGATCAGGTATCCAGAGGGCATAAAACAAATCTCT 5274 >seq405401 Length=1294 Score = 132 bits (146), Expect = 7e-26 Identities = 164/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||||||||| | ||||| ||||||| ||| | || | ||||| |||| ||| ||| Sbjct 645 CCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGAAGCATTGGAACAATGCCA 586 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 ||||| | ||| |||||||| ||||||||||| |||| || ||||| | ||| Sbjct 585 TTAGACGTCCCAGTTGTTCCACGGATATAACTTCCCGTTGCACGGATATTGTGTACAGAG 526 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| ||| |||||||| || | |||||||||||| Sbjct 525 ACCCCAATTCCTCCAGCTGATTTGCTGATAAGAGCACACTCCTTGAGTGTGTCATATATG 466 Query 69931 CCCTCTATGCTATCATCTATCATG-TTAAGAAGAAAACAGCT 69971 ||||| || || |||||| ||||| || ||| |||||||| Sbjct 465 CCCTCAATACTGTCATCTTTCATGCATATTAAG-AAACAGCT 425 Score = 102 bits (112), Expect = 1e-16 Identities = 118/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 69490 TCTTTTTCATATT--GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547 ||| | ||||||| ||||||| ||| ||| ||||| || |||||| |||| |||| | Sbjct 1283 TCTCTCTCATATTTAGTGTATAAAGC--TTCAAATTCCTCGCCCCAACAATCAGCCAACC 1226 Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607 ||||| ||||||||||||| | |||||||||| ||| | ||||| | ||||| Sbjct 1225 CAGGAGATTCATTTGGACAAAACAATGACCACTGTCCATAGGACCGAACTCTCTCCATAA 1166 Query 69608 ATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCT 69644 ||||||| || ||||| || || ||| | |||||| Sbjct 1165 ATAGATCAGGTATCCAGAGGGCACAAAACAAATCTCT 1129 >seq154576 Length=476 Score = 123 bits (136), Expect = 3e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||||||||| | ||||| ||||||| ||| | || | ||||| |||| ||| ||| Sbjct 385 CCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGAAGCATTGGAACAATGCCA 326 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 ||||| | ||| |||||||| ||||||||||| |||| || ||||| | ||| Sbjct 325 TTAGACATCCCAGTTGTTCCACGGATATAACTTCCCTTTGCACGGATATTGTGTACAGAG 266 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| ||| |||||||| || | ||||||| |||| Sbjct 265 ACCCCAATTCCTCCAGCTGATTTGCTGATAAGAGCACACTCCTTGAGTGTGTCAAATATG 206 Query 69931 CCCTCTATGCTATCATCTATCATG-TTAAGAAGAAAACAGCT 69971 ||||| || || ||||| ||||| || ||| |||||||| Sbjct 205 CCCTCAATACTGCCATCTTTCATGCATATTAAG-AAACAGCT 165 >seq677466 Length=8805 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||||||| || ||||||||||| || ||| |||||||| ||||| || | Sbjct 7609 GCACGCAAAGTCACAGTGGAGGCCCTCATCCCTGGAAATCAATTCGTTTGAAAAAGTCAA 7668 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 ||||||||| | |||||||| || ||||| || || || ||| ||| |||||| || | Sbjct 7669 TCCAGGCATCAATCCACGCTTCTTCAGCCAGAAAATCGC-GCAGAAGCTTCCAGAGAAAA 7727 Query 39735 AGATGCCTTCTAC 39747 | || || || || Sbjct 7728 AAATCCCCTCCAC 7740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 680088757288320