Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq677466 105 5e-18 >seq677466 Length=8805 Score = 105 bits (116), Expect = 5e-18 Identities = 235/345 (68%), Gaps = 6/345 (2%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || ||||| ||||| || ||||| || || || ||||||||||| || | Sbjct 7947 TTCTACGGCTTCCAAATCGCCATCGAGAATATCCACTCCGAGATGTACAGTCTCCTCCTC 7888 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCA-TCGATTGTTTAATGCGATAGAAACAGT 44061 || | |||||||| ||| | || ||| || || ||| || || || || || Sbjct 7887 GAATCCTACATCAAGGATTCCGAAGAAAAGAGCTCCCTT-TTTCGCGCAATTGATACTGT 7829 Query 44062 ACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTT 44120 ||| ||| | ||| || || | |||||||| ||||| || ||| || | Sbjct 7828 CCCTTGCG-TCCAACGCAAGGCCAATTGGGCCCTCCGTTGGATCGATGGCTCTGAATCCT 7770 Query 44121 TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-T 44179 ||| || || | |||| ||||| |||||| || ||||| || || ||| || | Sbjct 7769 TTGCTGAGCGGATAATCGCCTTTGCTTGTGTGGAGGGGATTTTTTTCTCTGGAAGCTTCT 7710 Query 44180 GCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAG 44239 ||| | || || ||| | ||||| || || ||||||||||| ||||| |||||||| || Sbjct 7709 GCG-CGATTTTCTGGCTGAAGAAGCGTGGATTGATGCCTGGATTGACTTTTTCAAACGAA 7651 Query 44240 TTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || || | ||||| ||| | || || || ||||| ||| || Sbjct 7650 TTGATTTCCAGGGATGAGGGCCTCCACTGTGACTTTGCGTGCCTG 7606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393608472899440