Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq621678 100 2e-16 seq731700 95.1 1e-14 seq500796 93.3 4e-14 seq502676 91.5 1e-13 seq610506 82.4 6e-11 >seq621678 Length=9740 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || ||||| || ||| | | |||| |||| |||||||| || || Sbjct 1022 CGTGGACTCCTTCTGGATATTATAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 1081 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | ||||||||||| ||||| || || | ||| || || || ||||||| || Sbjct 1082 AGCAAAGATGAGACGCTGCTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTGGCCTT 1141 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | || || | | || ||||| |||||||| | |||||| || || || Sbjct 1142 GACGTTATCAATTGTATCGGAGCTCTCGACTTCGAGAGTTATGGTTTTGCCGGTGAGGGT 1201 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 1202 TTTCACGAAGATCTGCAT 1219 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || ||||||| ||||| || | | | || | || ||| Sbjct 327 ACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCAAGGGTTCGTCCATCCTCG 386 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | || || | ||||||||| || || | |||||||| || Sbjct 387 AGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGGATGCCCTCTTTGTCCTGA 446 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | || | |||||| | | || || || ||||| || | ||| Sbjct 447 ATCTTTGCTTTGACATTATCAATAGTGTCAGAGCTCTCCACCTCCAGAGTAATGGTTTTT 506 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||||||||||| || |||||| Sbjct 507 CCAGTCAATGTTTTCACAAATATCTGCATA 536 >seq731700 Length=3081 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||||||| | || || || |||||||| ||||| || | | | || | Sbjct 1589 CGCAGAACCAAATGGAGGGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTACGGCCA 1530 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || ||||||||||| || ||| | || || | |||||| ||||| || | ||||| || Sbjct 1529 TCCTCGAGCTGTTTCCCAGCGAAGATCAGCCTCTGTTGGTCCGGTGGGATTCCCTCCTTG 1470 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| ||| | | | || | || |||| | ||| || || || || || Sbjct 1469 TCCTGGATCTTGGCTTTAACGTTGTCAATTGTATCTGAGCTTTCCACCTCAAGGGTAATG 1410 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || ||||| |||||||| ||||| Sbjct 1409 GTCTTCCCTGTGAGGGTTTTGACAAAGATCTGCAT 1375 >seq500796 Length=7474 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| |||||||||| ||| | ||||| ||||| || || ||||| ||| | Sbjct 2792 CCTCCCCTCAAACGCAATACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGG-C 2734 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | | | ||||| ||||| || || || | || | |||||||||||| || || Sbjct 2733 AAGTGTCCTACCATCTTCAAGCTGCTTCCCAGCAAAGATCAAACGCTGTTGATCAGGAGG 2674 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| ||||| |||||| || | | || | ||||||| |||||| Sbjct 2673 GATGCCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCAATTGTGTCTGAACTTTCAAC 2614 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || || |||| ||| ||||| ||||| ||||| Sbjct 2613 CTCCAAGGTAATCGTCTTTCCTGTCAAAGTCTTCACGAAGATCTGCAT 2566 >seq502676 Length=6550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || ||||| || ||| | | | || | || |||||||| || || Sbjct 590 CGTGGACTCCTTCTGTATATTATAATCGGCGAGGGTCCGGCCATCCTCGAGCTGCTTGCC 531 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| ||||| || || | ||| || ||||| ||||||| || Sbjct 530 GGCGAAGATGAGACGCTGCTGATCGGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTT 471 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | |||| || || | | || ||||| ||||| || | ||||| || || || Sbjct 470 GACATTATCTATGGTATCGGAGCTCTCGACTTCGAGAGTAATGGTCTTGCCGGTTAGGGT 411 Query 27230 TTTCACAAAGATTTGCAT 27247 ||| || ||||| ||||| Sbjct 410 TTTGACGAAGATCTGCAT 393 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | || | || | ||| || || || || ||||| || || | Sbjct 847 CCTCCGCGTAGACGAAGAACGAGGTGAAGCGTGGACTCCTTCTGGATATTATAATCCGCC 788 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || |||| || ||||| || || ||| | ||||||||||||||||||||||| Sbjct 787 AGCGTCCGGCCGTCCTCTAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGATCCGGCGGA 728 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| || | | | || | || || | ||||| Sbjct 727 ATCCCCTCCTTGTCTTGGATCTTCGCCTTAACGTTATCAATCGTATCCGAACTCTCAACC 668 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||| || | || ||||| || ||||| || ||||| ||||| Sbjct 667 TCTAAAGTAATCGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 621 >seq610506 Length=714 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| ||||| || || ||||| || ||| | | | | || |||| |||||||| || || Sbjct 257 CGTGGAGTCCTTCTGGATATTATAATCGGTGAGGGTCCGACCGTCCTCGAGCTGCTTCCC 316 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 |||| | ||||||||||| ||||| || || | ||| || ||||| ||||||| Sbjct 317 GGCGAAGATGAGACGCTGGTGATCAGGTGGAATACCTTCCTTATCCTGGATCTTG 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420820871408256