Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq445017 120 4e-22 seq677466 104 3e-17 seq551794 89.7 6e-13 seq651671 84.2 3e-11 seq794097 82.4 9e-11 seq615101 82.4 9e-11 >seq445017 Length=3110 Score = 120 bits (132), Expect = 4e-22 Identities = 283/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 || || ||||| | || || ||||| ||||| || | ||| ||||| | ||||| Sbjct 2290 TCGAGAATATCTGCACGGTTTGTGGCTGCAATGACAATAATACCAGTATTCCCTTCAAAA 2231 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | || || | ||||| ||||||||||||||| || | Sbjct 2230 CCATCCATTTCTGTCAACAGCTGGTTTAAAGTTTGCTCTCTCTCATCATTTCCTCC---A 2174 Query 11603 CC---ACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 || ||||| | | ||| || || |||||||| ||||||| || ||||| ||| Sbjct 2173 CCGATACCAGTCCCTCTTTGTCGTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 2114 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 ||| |||||| ||| | | || ||||| || |||| ||||| ||||||||| Sbjct 2113 GGTGCATTTTCCTTGGCTTTCTTGAAAAGATCACGGACCCGCGAAGCACCGACACCAACA 2054 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778 ||||| || ||||| | | | || | || || |||||||| | ||| || || Sbjct 2053 AACATTTCAACAAACTCAGAACCTGA-AATTGAGAAAAATGGGACCCCGGCTTCCCCAGC 1995 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 || || ||| || | |||||||||||||| || ||| | ||||| |||| Sbjct 1994 TATAGCCTTGGCTAGCAATGTCTTTCCCGTACCAGGAGGACCAACAAGAAGAACGCCCTT 1935 Query 11839 GGGGATCTTGGCA-CCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 || || ||| |||| || | | |||||||||| ||| | ||| ||||| | || Sbjct 1934 AGGAATACGAGCACCCACAGCCGTGA-ACCTCTCGGGTTTCTTCAAAAACTCCACCACCT 1876 Query 11898 C 11898 | Sbjct 1875 C 1875 >seq677466 Length=8805 Score = 104 bits (114), Expect = 3e-17 Identities = 305/460 (66%), Gaps = 20/460 (4%) Strand=Plus/Plus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| ||||| ||||| ||||||||||| || |||||||| | ||||| || ||||| Sbjct 7324 ATACTCCCCCACCCGTTTCTCAAAGAAATTCGTCTTCCCCTGCAGGCTGATCAACTCCAT 7383 Query 122430 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCA--CCCCAACTTGTTTGAGGAGA 122487 | |||||||| |||| | | || | || | || ||||||| || || | Sbjct 7384 CCAATCAAATGGGTTCTGCACATTGTACATCT-TCCCATACCCCAACGCATTC-AGCAAT 7441 Query 122488 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTA 122547 ||||||| |||| | |||||||||| | |||| ||| ||||| || | | | Sbjct 7442 CGATCCGCCACAAATTCAATGTACTGGCTCATCAATTCACCATTCATCCCCACCAACGCA 7501 Query 122548 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCG 122607 || || || || || | | || | |||| |||||||| || || ||| ||| | Sbjct 7502 CACGGCAGCGCATCGCACACAAATTCCCTCTCGATCTCAACAGCATCCGCCACTATGCCC 7561 Query 122608 TGGATAGTTTCGGTAGTGGGTC-------TATTACGCAAAGTCTTGAAGAGCTC-CACGG 122659 | | |||| | | | || | || ||| | || || ||| |||| Sbjct 7562 TTCAC--TTTC--TCCTCGCTCAGCTTCATCTTCAGCA--GGCTGTAA-AGCAGGCACG- 7613 Query 122660 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTG 122719 |||| || |||||| |||||||| | |||||| | ||| ||||| || | || | Sbjct 7614 CAAAGTCACAGTGGAGGCCCTCATCCCTGGAAATCAATTCGTTTGAAAAAGTCAATCCAG 7673 Query 122720 GCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATAC 122779 |||| | || |||||||||| ||| |||| |||||||| || ||||| || || | Sbjct 7674 GCATCAATCCACGCTTCTTCAGCCAGAAAATCGCGCAGAAGCTTCCAGAGAAAAAAATCC 7733 Query 122780 CCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 |||||||||| ||||| || | | || || || ||||| Sbjct 7734 CCTCCACACAAGCAAAGGCGATTATCCGCTCAGCAAAGGA 7773 >seq551794 Length=11183 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| ||||||||||| || || || | ||| ||| | ||| | ||| Sbjct 4678 TGGGGCCTTGGTGTCCCAGCATTGAAAAGCGTGGGAGATGCATGAGTAAACCATCGCTGG 4737 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||| | ||||| | | || ||||||||||| ||| ||||| ||| | || Sbjct 4738 GACAATAGATGATATGTTTGTATTACTGAATCAATGTCATCCTTGTGGACGCCAACAGCA 4797 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 112120 || | ||| ||||||| ||| || |||| | | | |||| | | | | ||||| Sbjct 4798 ACTCTCATCAACATGTGCTGAGGCCTTTCAACAACTTTCCCATTAATCTTTAGGAGATAA 4857 Query 112121 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | | ||||||||||| | ||||||||| || | ||| |||| Sbjct 4858 GACCTTTCAAGGGTTTTAAAACCAAAGTAGTCATAGTCAAAGTC 4901 >seq651671 Length=10698 Score = 84.2 bits (92), Expect = 3e-11 Identities = 260/398 (65%), Gaps = 12/398 (3%) Strand=Plus/Minus Query 11462 CCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACA 11521 ||||| | || || || ||||||||| |||| | ||| || ||| | | ||| | | Sbjct 7092 CCCGGCCTCAGCAGTGCTGCATCAAGGACATCCGGTCTATTCGTCGCCCCCAAAACTATA 7033 Query 11522 ATGCCAGTCTCATTGTC---AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGT 11578 | ||||| ||| | ||| |||||||| || || | || ||||| || ||||| Sbjct 7032 ACGCCAGA---ATTCCCCAAAAATCCATCCATTTCCGTCAATAGCTGATTGATGGTTTGC 6976 Query 11579 TCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCA 11635 || |||||||| || | || |||| || || | | ||| | || || ||||| Sbjct 6975 TCCCTCTCATCGTTCCC--GCC-ACCAAGCCCCGCCCCTCTCTGCCTCCCGACAGCATCT 6919 Query 11636 ATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGA 11695 || ||||||||||| || |||||||| || | ||| | || || | ||| | Sbjct 6918 ATTTCATCAATGAACACTATACATGGAGCTTTAGCCTTGGCCTTATCGAACAAATCCCTC 6859 Query 11696 ACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATG 11755 || ||| || || || || ||||||| ||| ||||| | || || | || | | Sbjct 6858 ACTCTTGAAGCCCCAACGCCCACAAACAGCTCTACAAACTCTGAAGCTGCACAAGAAAAG 6799 Query 11756 AATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 ||||| || || ||| || || | || | || || || ||||| ||||| || ||| Sbjct 6798 AATGGCACCCCTGCTTCCCCGGCCACCGCCCTCGCCAGAAGAGTCTTCCCCGTGCCAGGC 6739 Query 11816 TTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||| | | || |||| ||||| || ||||| Sbjct 6738 GGACCGACCAATAGACAGCCTTTCGGGATTTTCGCACC 6701 >seq794097 Length=14469 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/223 (69%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| | ||||||||| || || || | ||| || ||||| | || ||||| | || Sbjct 12005 GTGCAAACCCTCATCCCGCGATATCAATTCGTTGGAGAACGTCAACCCGGGCATCAACCC 12064 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| ||||||||||| || |||||||| || Sbjct 12065 GCGCTTCTTAAGCCAGAATATTGCGCAGAAGCTTCCGGAGAAGAATATCCCCTCCACGCA 12124 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA-GCGAGACTTTGCATCAAACCATTTCATTG 122848 || || || | || || |||| |||||| || || | | || ||| || | Sbjct 12125 GGCGAAGGCGAGCAGACGCTCGGTGAAGGATTCGGAAC----CCTGAATCCAGCGCAGGG 12180 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 |||| || ||||| |||| | || || | || |||||||| Sbjct 12181 CCCAATTGGCCTTGTTCTGGACGCAGGGAATGGTGTGGATGGC 12223 >seq615101 Length=1483 Score = 82.4 bits (90), Expect = 9e-11 Identities = 186/277 (67%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG- 11597 ||| |||||||| || || | | || ||||| ||||| |||| ||||||||| | Sbjct 1057 AAAACCATCCATTTCAGTCAAGAGCTGGTTAATAGTTTGCTCTCGCTCATCATTCCCACC 998 Query 11598 GCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 || | | || || | | ||| | ||||| |||||||| ||||||||||| ||||| | Sbjct 997 GCCGAGC-CCTGCCCCTCTCTGCCTCCCCACAGCATCAATTTCATCAATGAAAACAATGC 939 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || || ||| | ||||| | ||| | || ||| || || ||||| | Sbjct 938 AAGGCGCCTTCGACTTGGCTTTCTCAAACAAATCCCTCACTCTTGAAGCTCCAACACCCA 879 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| ||| ||||| | | || | ||| || ||| || || || ||||| | Sbjct 878 CAAACAGCTCTACAAACTCGGATGCTGCACACGAGAAGAACGGCACGCCTGCCTCACCGG 819 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | | || | || | ||||||||||| ||||| || Sbjct 818 CCACCGCCCTTGCCAAAAGGGTCTTTCCGGTACCCGG 782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621796521484800