Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq677466 131 2e-25 seq615101 102 1e-16 seq794097 91.5 2e-13 seq651671 89.7 6e-13 seq445017 87.8 2e-12 >seq677466 Length=8805 Score = 131 bits (144), Expect = 2e-25 Identities = 309/456 (68%), Gaps = 12/456 (3%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| ||||| ||||| ||||| ||||| || |||||||| | || |||||| |||||| Sbjct 7324 ATACTCCCCCACCCGTTTCTCAAAGAAATTCGTCTTCCCCTGCAGGCTGATCAACTCCAT 7383 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 ||||||||||||||| || | || | | || |||| | || || | | Sbjct 7384 CCAATCAAATGGGTTCTGCACATTGTACATCTTCCCATACCCCAA-CGCATTCAGCAATC 7442 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||||| || | |||||||||| |||| || ||||| || | | || Sbjct 7443 GATCCGCCACAAATTCAATGTACTGGCTCATCAATTCACCATTCATCCCCACCAACGCAC 7502 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || ||||| || | | || || |||| || || ||||| ||| ||| ||| | | Sbjct 7503 ACGGCAGCGCATCGCACACAAATTCCCTCTCGATCTCAACAGCATCCGCCACTATGCCCT 7562 Query 129966 GAATGGTCTCCGTGC-CAGGTCTAT--TGCGCAAAGTCT-TGAAG-AGTTCCACGGCAAA 130020 | ||||| || ||| | || | ||| | || | ||| || |||| |||| Sbjct 7563 TCACTTTCTCCTCGCTCAGCTTCATCTTCAGCA--GGCTGTAAAGCAGG--CACG-CAAA 7617 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || |||||| ||||| || | ||| || | ||| || || || || || ||||| Sbjct 7618 GTCACAGTGGAGGCCCTCATCCCTGGAAATCAATTCGTTTGAAAAAGTCAATCCAGGCAT 7677 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 | || |||||||||| |||||||||||| || || |||||||| || |||||||| Sbjct 7678 CAATCCACGCTTCTTCAGCCAGAAAATCGCGCAGAAGCTTCCAGAGAAAAAAATCCCCTC 7737 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 |||||| || || || | | |||||||||||||| Sbjct 7738 CACACAAGCAAAGGCGATTATCCGCTCAGCAAAGGA 7773 >seq615101 Length=1483 Score = 102 bits (112), Expect = 1e-16 Identities = 193/279 (69%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA-G 14210 ||| |||||||| ||||||||||| || || || ||||| || || ||||||||| || Sbjct 1057 AAAACCATCCATTTCAGTCAAGAGCTGGTTAATAGTTTGCTCTCGCTCATCATTCCCACC 998 Query 14211 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 || | | || || | | ||| | || || || ||||||||||| |||||||| || | Sbjct 997 GCCGAGC-CCTGCCCCTCTCTGCCTCCCCACAGCATCAATTTCATCAATGAAAACAATGC 939 Query 14271 ATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 | || | || || ||| ||||| | ||| | |||||| || || |||||| Sbjct 938 AAGG-CGCCTTCGACTTGGCTTTCTCAAACAAATCCCTCACTCTTGAAGCTCCAACACCC 880 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 ||||||| ||| ||||| | || || | ||| || ||| || ||| | ||||| Sbjct 879 ACAAACAGCTCTACAAACTCGGATGCTGCACACGAGAAGAACGGCACGCCTGCCTCACCG 820 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || | || | || | |||||||| || || || ||| Sbjct 819 GCCACCGCCCTTGCCAAAAGGGTCTTTCCGGTACCCGGT 781 >seq794097 Length=14469 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | |||||| || || || || | ||| || ||||| || || ||||| | || Sbjct 12005 GTGCAAACCCTCATCCCGCGATATCAATTCGTTGGAGAACGTCAACCCGGGCATCAACCC 12064 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || || || |||||||| ||||||||||| || Sbjct 12065 GCGCTTCTTAAGCCAGAATATTGCGCAGAAGCTTCCGGAGAAGAATATCCCCTCCACGCA 12124 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCG 130205 ||||| || | |||||||| | ||||| ||| || || || ||| || | Sbjct 12125 GGCGAAGGCGAGCAGACGCTCGGTGAAGGATTCGGAACCCTG----AATCCAGCGCAGGG 12180 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||| | ||||| |||| || || || | ||| ||||| || Sbjct 12181 CCCAATTGGCCTTGTTCTGGACGCAGGGAATGGTGTGGATGGC 12223 >seq651671 Length=10698 Score = 89.7 bits (98), Expect = 6e-13 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| || ||||| || |||||||||||||| || | ||||| ||| | | Sbjct 7015 AAATCCATCCATTTCCGTCAATAGCTGATTGATGGTTTGCTCCCTCTCATCGTTCCC--G 6958 Query 14212 CATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268 | |||| ||||| | | ||| | ||||| || || |||||||| ||||| || || Sbjct 6957 C-CACCAAGCCCCGCCCCTCTCTGCCTCCCGACAGCATCTATTTCATCAATGAACACTAT 6899 Query 14269 ACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 |||||| || | ||| || || | ||| | |||||| || || || || Sbjct 6898 ACATGGAGCTTTAGCCTTGGCCTTATCGAACAAATCCCTCACTCTTGAAGCCCCAACGCC 6839 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 |||||||| ||| ||||| | | || | ||| | ||| || || | ||| || Sbjct 6838 CACAAACAGCTCTACAAACTCTGAAGCTGCACAAGAAAAGAATGGCACCCCTGCTTCCCC 6779 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | || | || || || ||||||||||| || || Sbjct 6778 GGCCACCGCCCTCGCCAGAAGAGTCTTCCCCGTGCCAGG 6740 >seq445017 Length=3110 Score = 87.8 bits (96), Expect = 2e-12 Identities = 231/346 (67%), Gaps = 10/346 (3%) Strand=Plus/Minus Query 14087 AGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCG 14146 ||||| ||| || ||||| ||||| || || || ||||||| || || || | Sbjct 2299 AGGGCAGAGTCGAGAATATCTGCACGGTTTGTGGCTGCAATGACAATAATACCAGTATTC 2240 Query 14147 TTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTC 14206 ||||| |||||||| || ||||| || || || | ||||| || | |||||||| Sbjct 2239 CCTTCAAAACCATCCATTTCTGTCAACAGCTGGTTTAAAGTTTGCTCTCTCTCATCATTT 2180 Query 14207 GC---AGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAA 14263 | | |||||| | | || || | || || || ||||||||||| | ||| Sbjct 2179 CCTCCACCGATACCAGTCCCTCTTTGTCGT---CCAACAGCATCAATTTCATCAACAAAA 2123 Query 14264 ACGATACATGGTTGATTTTCACGGGCAA-CTTCAAAGATATCTCGCACTCTCTTGGCACC 14322 || || |||||| |||||| ||| ||| ||| | ||| || || | | ||||| Sbjct 2122 ACAATGCATGGTGCATTTTCCTTGGCTTTCTTGAAA-AGATCACGGACCCGCGAAGCACC 2064 Query 14323 GACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAG 14381 |||||| |||||||| || ||||| | | | ||| |||| || || ||||| | Sbjct 2063 GACACCAACAAACATTTCAACAAACTCAGAACCTGAA-ATTGAGAAAAATGGGACCCCGG 2005 Query 14382 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 ||| || || || || ||| || | ||||| ||||| || || Sbjct 2004 CTTCCCCAGCTATAGCCTTGGCTAGCAATGTCTTTCCCGTACCAGG 1959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612295004273280