Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq445017 129 7e-25 seq615101 100 3e-16 seq677466 98.7 1e-15 seq794097 91.5 2e-13 >seq445017 Length=3110 Score = 129 bits (142), Expect = 7e-25 Identities = 237/338 (70%), Gaps = 12/338 (4%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAAA 9615 || || ||||| | || || || || || ||||||| |||||| || ||| | ||||| Sbjct 2290 TCGAGAATATCTGCACGGTTTGTGGCTGCAATGACAATAATACCAGTATTCCCT-TCAAA 2232 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| |||||||| || ||||| | |||||| || | |||||||| || Sbjct 2231 ACCATCCATTTCTGTCAACAGCTGGTTTAAAGTTTGCTCTCTCTCATCATTTCCT---CC 2175 Query 9676 ACC---ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 ||| ||||| | | ||| ||| || |||||||| ||||||| || || ||||| Sbjct 2174 ACCGATACCAGTCCCTCTTTGTCGTCCAACAGCATCAATTTCATCAACAAAAACAATGCA 2115 Query 9733 TGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 |||| |||||| || ||| ||| ||||| || || ||| || || ||||||| Sbjct 2114 TGGTGCATTTTCCTTGGCTTTCTTGAAA-AGATCACGGACCCGCGAAGCACCGACACCAA 2056 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 ||||||| || ||||| | | | ||| |||| || || ||||| | ||| || Sbjct 2055 CAAACATTTCAACAAACTCAGAACCTGAA-ATTGAGAAAAATGGGACCCCGGCTTCCCCA 1997 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || || ||| || | ||||| |||||||| || Sbjct 1996 GCTATAGCCTTGGCTAGCAATGTCTTTCCCGTACCAGG 1959 >seq615101 Length=1483 Score = 100 bits (110), Expect = 3e-16 Identities = 310/475 (65%), Gaps = 26/475 (5%) Strand=Plus/Minus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||||||||| | || || | || | || |||| |||| ||| | || || Sbjct 1150 CTGACGATCAAACCTGCCAGGCCTCAGCAATGCTGCATCGAGGACATCCGGCCTGTTGGT 1091 Query 9580 CGCGGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAAAGT 9637 ||| || | || | || ||| | |||| | | |||||||||||| || ||||| || Sbjct 1090 CGCAGCCAAAACTATAACACCAGAATTTCCTGA--AAAACCATCCATTTCAGTCAAGAGC 1033 Query 9638 TGGTTAATAGTTTGTTCCCGTTCATCATTCGC-TGGCATACCACCAGCACTGCGTTGCTT 9696 |||||||||||||| || || ||||||||| | || | | || || | | ||| | Sbjct 1032 TGGTTAATAGTTTGCTCTCGCTCATCATTCCCACCGCCGAGC-CCTGCCCCTCTCTGCCT 974 Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT-- 9754 ||||| |||||||| ||||||||||| || ||||| || ||| ||||| Sbjct 973 CCCCACAGCATCAATTTCATCAATGAAAACAATGCAAGG--------CGCCTTCGACTTG 922 Query 9755 ------TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAA 9806 ||||| | ||||| ||| |||| || || ||||| ||||||| ||| |||| Sbjct 921 GCTTTCTCAAACAAATCCC--TCACTCTTGAAGCTCCAACACCCACAAACAGCTCTACAA 864 Query 9807 AGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9866 | | | || | ||| || ||| || || | ||||| || | || | || | Sbjct 863 ACTCGGATGCTGCACACGAGAAGAACGGCACGCCTGCCTCACCGGCCACCGCCCTTGCCA 804 Query 9867 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGC 9926 ||| ||||| || ||||| || |||| | | || ||| |||||| || || | Sbjct 803 AAAGGGTCTTTCCGGTACCCGGTGGACCCACCAAAAGACACCCTTTTGGAATTTTTGCAC 744 Query 9927 CACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTC 9981 | || ||| | ||||| | || | ||||| || | ||||| ||| || Sbjct 743 CCAAAGCAGTGTACTTATCAGGGTTTTTCAAGAAATCAACCACTTCTTGCAACTC 689 >seq677466 Length=8805 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 |||||||||||||| | |||| ||||| ||||| ||||| || || |||||||| | Sbjct 7773 TCCTTTGCTGAGCGGATAATCGCCTTTGCTTGTGTGGAGGGGATTTTTTTCTCTGGAAGC 7714 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| |||| ||||| |||||||| || | ||||| || | || || ||| Sbjct 7713 TTCTGCGCGATTTTCTGGCTGAAGAAGCGTGGATTGATGCCTGGATTGACTTTTTCAAAC 7654 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || | || || | || ||||| |||||| || |||||| Sbjct 7653 GAATTGATTTCCAGGGATGAGGGCCTCCACTGTGACTTTGCG 7612 >seq794097 Length=14469 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/255 (68%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 94684 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGT 94743 ||||| |||||| ||| |||||| |||||| |||||||| || |||| || Sbjct 12262 TATATCAAGGATTCTGCCGAGAAGGCCATGCTCTTCCGCGCCATCCACACCATTCCCTGC 12203 Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT-TCCTTTGC 94802 | || || || || ||||||| || ||| || || || || ||||| | Sbjct 12202 GTCCAGAACAAGGCCAATTGGGCCCTGCGCTGGATT----CAGGGTTCCGAATCCTTCAC 12147 Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 ||||| || |||| || || || || ||||| || |||||||| || ||||||||| Sbjct 12146 CGAGCGTCTGCTCGCCTTCGCCTGCGTGGAGGGGATATTCTTCTCCGGAAGCTTCTGCGC 12087 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || | ||||| |||||||| || | ||||| || | ||||||||||| | || Sbjct 12086 AATATTCTGGCTTAAGAAGCGCGGGTTGATGCCCGGGTTGACGTTCTCCAACGAATTGAT 12027 Query 94923 CTCTCGTGACGAGGG 94937 || || || ||||| Sbjct 12026 ATCGCGGGATGAGGG 12012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577469836821120