Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq677466 178 1e-39 seq794097 140 4e-28 seq611863 82.4 8e-11 seq548568 82.4 8e-11 >seq677466 Length=8805 Score = 178 bits (196), Expect = 1e-39 Identities = 404/595 (68%), Gaps = 12/595 (2%) Strand=Plus/Minus Query 59530 TTCTCGCGCCGAGCACCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGATCTGTGGG 59589 ||||||| || | | ||| || ||| | || ||||| | |||||| | | |||| Sbjct 8213 TTCTCGCCCCCAACCCCGACCGCTTCTGTATGTTCCCTATCCAGTACCCTCAAATCTGGG 8154 Query 59590 CCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAG 59649 |||| |||||||| | || |||||| ||| ||||||| | || | || | Sbjct 8153 AGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGATTTGTCCCAGG 8094 Query 59650 ACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 | | | |||||| |||| | |||||||| || ||||||||| ||||| | Sbjct 8093 ATATTCGCCACTGGGACTCCCTCACTCCCGACGAGCGCCACTTCATCAAGCACGTCCTCG 8034 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCC--AA 59767 |||||||||| || ||||| || || | || ||| | | | | | |||| || Sbjct 8033 CCTTCTTCGCCGCCTCCGATGGCATCGTTCTCGAGAATCTCGCC--GGCCGTTTCATGAA 7976 Query 59768 GGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTA 59826 ||| |||||| | | |||||||| | ||||||| | || ||| || |||| || Sbjct 7975 GGAGGTCCAGGTCTCTGAGGCCCGCGCCTTCTACGGCTTCCAAATCGC-CATCGAGAATA 7917 Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG- 59885 |||||||||||| |||| ||| | |||| | |||||||| | ||||| ||| Sbjct 7916 TCCACTCCGAGATGTACAGTCTCCTCCTCGAATCCTACATCAAGGATTCCGAAGAAAAGA 7857 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 ||| || || || || || || || ||||| || || ||| || || | ||||| Sbjct 7856 GCTCC-CTTTTTCGCGCAATTGATACTGTCCCTTGC-GTCCAACGCAAGGCCAATTGGGC 7799 Query 59945 CATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCG 60003 | | | ||||| || || | ||| ||||| | || | || || ||||| || | Sbjct 7798 CCTCCGTTGGATCGATGGCTCT-GAATCCTTTGCTGAGCGGATAATCGCCTTTGCTTGTG 7740 Query 60004 TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCC 60063 |||| || || || |||||||| ||||| || ||||||||||| || |||||||| Sbjct 7739 TGGAGGGGATTTTTTTCTCTGGAAGCTTCTGCGCGATTTTCTGGCTGAAGAAGCGTGGAT 7680 Query 60064 TCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | ||||| || ||| ||| || ||||| |||||||| |||| ||||||||||| Sbjct 7679 TGATGCCTGGATTGACTTTTTCAAACGAATTGATTTCCAGGGATGAGGGCCTCCA 7625 >seq794097 Length=14469 Score = 140 bits (154), Expect = 4e-28 Identities = 295/436 (68%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 59681 CGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGAT 59740 |||| |||||||||||||| ||||| ||||||||||| || || || || || | Sbjct 12443 CGAGAAGCATTTCATCAAGCACGTCCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCCT 12384 Query 59741 GGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTA 59800 || ||| | | | ||| || || |||||| | |||||||||| | ||||| Sbjct 12383 CGAGAATCTTGCCGCCCGCTTCATGAACGAGGTCCAGGTCTCCGAGGCCCGCGCCTTCTA 12324 Query 59801 CGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAA 59860 || | ||| || |||| ||||||||||||| |||| || ||||||| | Sbjct 12323 CGGCTTCCAGATTGCCATCGAGAACATCCACTCCGAGATGTACAGCCTTTTGATCGAGAC 12264 Query 59861 GTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCG 59919 | |||||||| | | |||||||| || ||||| ||||| | || | ||| | Sbjct 12263 CTATATCAAGGATTCTGCCGAGAAGGCCATGCTCTTCCGCGCCATCCACACCATTCCCTG 12204 Query 59920 CAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGC---ATCATTTG 59976 | || | | || || | |||||| ||| ||||| || || | ||| || Sbjct 12203 C-GTCCAGAACAAGGCCAATTGGGCCCTGCGCTGGAT---TCAGGGTTCCGAATCCTTCA 12148 Query 59977 CACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG 60036 | | ||||| | || || || |||||||| || || |||||||| || ||||| | Sbjct 12147 CCGAGCGTCTGCTCGCCTTCGCCTGCGTGGAGGGGATATTCTTCTCCGGAAGCTTCTGCG 12088 Query 60037 CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGA 60096 | || |||||||| || ||||| || | ||||| || ||| ||||||||||| ||| Sbjct 12087 CAATATTCTGGCTTAAGAAGCGCGGGTTGATGCCCGGGTTGACGTTCTCCAACGAATTGA 12028 Query 60097 TTTCCCGGGACGAGGG 60112 | || ||||| ||||| Sbjct 12027 TATCGCGGGATGAGGG 12012 >seq611863 Length=950 Score = 82.4 bits (90), Expect = 8e-11 Identities = 195/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGC-GATCGGTTCATTCTG 59620 || ||||| ||||||| | | |||| |||| |||||||| || ||| ||||| Sbjct 625 TTCCCTATCGGGTACCCTCAAATCTGGGAGATGTACAAGAAAGCCGAGGCCTTC-TTCTG 683 Query 59621 GTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGA 59680 | ||| ||||||| | || | || || | | |||||| |||| | ||| Sbjct 684 GACCGCCGAGGAGGTCGATTTGTCCCAGGATATTCGCCACTGGGACTCCCTCACTCCCGA 743 Query 59681 CGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGAT 59740 ||||| || ||||||||| ||||| ||||||||||| || ||||| || || | Sbjct 744 CGAGCGCCACTTCATCAAGCACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTTCT 803 Query 59741 GGAAAATATAGACATGAACTTTTC--CAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 || ||| | | | || | |||| ||||| |||||| | | |||||||| | ||| Sbjct 804 CGAGAATCTCG-CCTG-CCGTTTCATGAAGGAGGTCCAGGTCTCTGAGGCCCGCGCCTTC 861 Query 59799 TAC-GCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTAC 59843 ||| || | | ||| || |||| |||||||||||||| |||| Sbjct 862 TACGGCTTCCAAATCG-CCATCGAGAATATCCACTCCGAGATGTAC 906 >seq548568 Length=13427 Score = 82.4 bits (90), Expect = 8e-11 Identities = 162/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||| || | ||||| |||||||| ||||||||||| || || || |||||| Sbjct 4554 AGCTGTTTCTTAATATGCATGAAAGATGACAGTATTGAGGGCATATATGACACACTCAAG 4613 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTC-GAATATCCG 19371 ||||| || ||| ||| | | || || || ||| | | ||| | |||||||| Sbjct 4614 GAGTGTGCTGTTATCAGCAAATCAGCTGGAGGAATTGGGGT-CTCTGTACACAATATCCG 4672 Query 19372 GTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCT 19431 | | || | ||| ||| || || ||| | | | || || || |||||||| Sbjct 4673 TGCAACGGGAAGTTATATCCGTGGAACAAATGGAATGTCTAATGGCATTGTTCCAATGCT 4732 Query 19432 CCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGG 19488 ||| || ||||| |||| || || || || | ||||| || |||||| | || || Sbjct 4733 CCGTGTGTTCAATGACACTGCTAGATATGTGGATCAGGGAGGTGGCAAAAGGAAAGG 4789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543078716670720