Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq677466 178 1e-39 seq794097 95.1 1e-14 seq699194 86.0 7e-12 seq611863 84.2 2e-11 seq770531 82.4 8e-11 >seq677466 Length=8805 Score = 178 bits (196), Expect = 1e-39 Identities = 538/815 (66%), Gaps = 22/815 (3%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || || ||||| || ||||| || || |||||||| | || ||| |||||| Sbjct 7324 ATACTCCCCCACCCGTTTCTCAAAGAAATTCGTCTTCCCCTGCAGGCTGATCAACTCCAT 7383 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAG 74578 ||| || || ||||||| || ||| || |||| | ||| ||| || | Sbjct 7384 CCAATCAAATGGGTTCTGCACATTGTACAT---CTTCCCATACCCCAACGCATTCAGCAA 7440 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 |||||||||||||||| ||||||||| |||| | | ||| ||| || | | Sbjct 7441 TCGATCCGCCACAAATTCAATGTACTGGCTCATCAATTCACCATTCATCCCCACCAACGC 7500 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTT 74698 |||||||| || ||| | ||| || ||||| | ||| ||| || | || | | Sbjct 7501 ACACGGCAGCGCATCGCACACAAATTCCCTCTCGATCTCAACAGC--ATCCGCCACTAT- 7557 Query 74699 GTGAATGTCTTTGGAAGGGCACTT-TTC--CCTCAGGTGAGAGTAAAGC-GTCACGGCAA 74754 | | |||| || | ||| | |||| | ||||||| | |||| ||| Sbjct 7558 GCCCTTCACTTTCTCCTCGCTCAGCTTCATCTTCAGCAGGCTGTAAAGCAGGCACG-CAA 7616 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | || || ||| ||||| ||| |||||||| || ||||| | | ||||||| Sbjct 7617 AGTCACAGTGGAGGCCCTCATCCCTGGAAATCAATTCGTTTGAAAAAGTCAATCCAGGCA 7676 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | | |||||||||||||| ||| || || || |||||| ||| ||| || || || | Sbjct 7677 TCAATCCACGCTTCTTCAGCCAGAAAATCGCGCAGAAGCTTCCAGAGAAAAAAATCCCCT 7736 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCT 74934 | ||||| |||||||||| | || | || || | | || | | |||||| Sbjct 7737 CCACACAAGCAAAGGCGATTATCCGCTCAGCAAAGGATTCAGAGCCATCGATCCAACGGA 7796 Query 74935 GAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTG 74994 | ||||| | || || |||| ||| |||||||||||| || || | || ||| Sbjct 7797 GGGCCCAATTGGCCTTGCGTTGGACGCAAGGGACAGTATCAATTGCGCGAAAAAGGGAGC 7856 Query 74995 CCTTCTCTTCGGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGA 75053 ||| ||||||| |||||||| | || | || | | || |||| |||| || || Sbjct 7857 TCTTTTCTTCGGAATCCTTGATGTAGGAT-TCGAGGAGGAGACTGTACATCTCGGAGTGG 7915 Query 75054 ATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATC 75112 || |||| || ||| ||| | ||||||| | || ||||| | | ||| || || Sbjct 7916 ATATTCTCGATG-GCGATTTGGAAGCCGTAGAAGGCGCGGGCCTCAGAGACCTGGACCTC 7974 Query 75113 CTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAA 75170 ||| ||||| | | ||| |||||| | |||||||| || ||||||||||| || Sbjct 7975 CTTCATGAAACGGCC--GGCGAGATTCTCGAGAACGATGCCATCGGAGGCGGCGAAGAAG 8032 Query 75171 GCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGG 75230 || || || ||||| ||||||||||| ||| |||||| |||||| | | Sbjct 8033 GCGAGGACGTGCTTGATGAAGTGGCGCTCGTCGGGAGTGAGGGAGTCCCAGTGGCGAATA 8092 Query 75231 TCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||| | |||||| | ||||||| | |||||||| Sbjct 8093 TCCTGGGACAAATCGACCTCCTCGGCGGTCCAGAA 8127 >seq794097 Length=14469 Score = 95.1 bits (104), Expect = 1e-14 Identities = 267/403 (66%), Gaps = 14/403 (3%) Strand=Plus/Plus Query 74783 TATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT 74842 ||||||||| || || |||| | || ||||| | || |||||||| | ||| || || Sbjct 12026 TATCAATTCGTTGGAGAACGTCAACCCGGGCATCAACCCGCGCTTCTTAAGCCAGAATAT 12085 Query 74843 GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTG 74902 || |||||| || |||||| || || || || || || ||||||| || || | Sbjct 12086 TGCGCAGAAGCTTCCGGAGAAGAATATCCCCTCCACGCAGGCGAAGGCGAGCAGACGCTC 12145 Query 74903 CGCGAACGGTGCATCGGAAGTC---ATCCAAGTCTGAGCCCATTCAGCTTTTCGTT-TGA 74958 | ||| | | |||||| | ||||| | | ||||| | || || ||| || Sbjct 12146 GGTGAAGGAT---TCGGAACCCTGAATCCAGCGCAGGGCCCAATTGGCCTT--GTTCTGG 12200 Query 74959 CCGCAGGGACAG-TATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG 75017 |||||||| | | | ||| || ||||||| | |||||||| | | |||||||| Sbjct 12201 ACGCAGGGAATGGTGTGGATGGCGCGGAAGAGCATGGCCTTCTCGGCAGAATCCTTGATA 12260 Query 75018 AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTAC 75077 | || |||| ||| |||| |||| || || || |||| || |||| | Sbjct 12261 TAGGTCTCGATCAAAAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCAATCTGGAAG 12320 Query 75078 GCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATAT 75135 ||||||| | || ||||| | | ||| || || || |||| | | | | || Sbjct 12321 CCGTAGAAGGCGCGGGCCTCGGAGACCTGGACCTCGTTCATGAAGCGGGC--GGCAAGAT 12378 Query 75136 TCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 |||| | |||||||||||| || |||||||| || || || || Sbjct 12379 TCTCGAGGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAGGAC 12421 >seq699194 Length=1927 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 862 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 921 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 922 TGAGCTATGAAAGC 935 >seq611863 Length=950 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 75038 GTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGC-GTAGAAAGACCGCGCCT 75096 |||| |||| || || || |||| || ||| | | | || |||||| | || |||| Sbjct 906 GTACATCTCGGAGTGGATATTCTCGATGG-CGATTTGGAAGCCGTAGAAGGCGCGGGCCT 848 Query 75097 CTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTC 75154 | | | ||| || ||||| ||||| || | ||| |||||| | |||||||| || Sbjct 847 CAGAGACCTGGACCTCCTTCATGAAACGG-CAGG-CGAGATTCTCGAGAACGATGCCATC 790 Query 75155 CGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTT 75214 ||||||||||| || || || || ||||| ||||||||||| ||| |||||| Sbjct 789 GGAGGCGGCGAAGAAGGCGAGGACGTGCTTGATGAAGTGGCGCTCGTCGGGAGTGAGGGA 730 Query 75215 GTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 |||||| | | ||| | |||||| | ||||||| | |||||||| Sbjct 729 GTCCCAGTGGCGAATATCCTGGGACAAATCGACCTCCTCGGCGGTCCAGAA 679 >seq770531 Length=2274 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 1076 GAATGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 1135 Query 79681 AATTGAGCTACGAAAGC 79697 || ||||||| |||||| Sbjct 1136 AACTGAGCTATGAAAGC 1152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541782911222400